Hg_chrom4_TN10mRNA_8613
Organism: Heterodera glycines Gene Locus: chr4:9425815-9430726 Feature type: polypeptideProtein Sequence
Length: 444
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.943 | 1.048 | 0.778 | 0.854 | 0.901 | 1.386 | 0.59 | 1.802 | 1.451 | 1.278 | 0.683 | 0.795 | 1.502 | 0.866 | 1.517 | 0.901 | 1.218 | 0.785 | 0.866 | 0.596 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8083
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.963
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
58-78
|
1.000
|
71-92
|
0.981
|
— | — |
0.000
|
— | — |
0.104
|
0.842
|
0.204
|
0.288
|
0.043
|
0.062
|
0.169
|
0.024
|
0.067
|
0.095
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002138
|
3.000
|
1.000
|
Hsc_gene_23606.t1
|
Hsc_gene_23606.t1
|
— |
Q924L9.1 Folylpolyglutamate synthase, mitochondrial [Cricetulus griseus]
|
KHN74839.1 Putative folylpolyglutamate synthase [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004326|GO:0005524|GO:0009058|GO:0009396
|
GO:0005575_0.772|GO:0110165_0.767|GO:0008150_0.726|GO:0005622_0.689|GO:0009987_0.674|GO:0003674_0.653|GO:0016020_0.622|GO:0005737_0.620|GO:0043226_0.564|GO:0008152_0.560|GO:0043229_0.547|GO:0044237_0.536|GO:0009058_0.533|GO:0043227_0.529|GO:0003824_0.511|GO:0043231_0.509
|
IPR001645+92-396_138-402+|IPR018109+161-184_259-274+|IPR036565+106-402_127-391+
|
— | — | — |
PTHR11136+92-396+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
392-444
|
1.000
|
1-391
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.768
|
50271.520
|
8.963
|
18.000
|
25.225
|
12.162
|
48.874
|
51.126
|
15.541
|
9.685
|
47.748
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
34.508
|
2.835
|
2.919
|
4.442
|
3.964
|
8.141
|
45.403
|
16.300
|
3.455
|
116.881
|
68.270
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
1.053
|
2.489
|
— |
1.624
|
-5.269
|
— |
-4.630
|
— | — |
No JSON data available for plots.