Hg_chrom4_TN10mRNA_8614
Organism: Heterodera glycines Gene Locus: chr4:9431538-9444819 Feature type: polypeptideProtein Sequence
Length: 1,402
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.979 | 1.095 | 1.284 | 0.221 | 1.807 | 2.414 | 0.45 | 1.391 | 0.935 | 1.369 | 0.973 | 1.217 | 0.911 | 0.288 | 1.659 | 0.693 | 0.608 | 0.692 | 1.317 | 0.524 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8084
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
LGEV,RKKK,RRRK,KRLLMLGEQRKRKLE,RRRLEEAWVERRKVL,RRNAQDIKAQRAKLKKV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.248
|
0.195
|
0.018
|
0.676
|
0.231
|
0.348
|
0.353
|
0.060
|
0.500
|
0.080
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001280
|
3.000
|
2.000
|
Hsc_gene_23607.t1;Hsc_gene_23607.t2
|
Hsc_gene_23607.t1;Hsc_gene_23607.t2
|
— |
P13395.2 Spectrin alpha chain [Drosophila melanogaster]
|
KAH7727929.1 spectrin alpha chainerythrocyte [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005515
|
GO:0005575_0.900|GO:0110165_0.893|GO:0005622_0.872|GO:0008150_0.803|GO:0043226_0.793|GO:0043229_0.770|GO:0005737_0.750|GO:0009987_0.750|GO:0016020_0.723|GO:0003674_0.713|GO:0043228_0.670|GO:0043232_0.670|GO:0071944_0.622|GO:0005488_0.613|GO:0016043_0.597|GO:0071840_0.597|GO:0005515_0.577|GO:0005886_0.559
|
IPR001452+1-31_1-39+|IPR002017+87-189_192-295_298-401_405-506_509-613_616-718_724-825_828-931_935-1038_1149-1247+|IPR002048+1260-1295_1264-1292_1264-1332_1267-1332_1303-1338_1307-1335+|IPR011992+1250-1400+|IPR014837+1339-1400+|IPR018159+86-298_88-189_195-295_299-507_301-401_407-505_510-721_511-612_618-718_620-826_724-824_724-931_828-1039_830-930_936-1037_1151-1246+|IPR018247+1316-1328+|IPR036028+1-52+
|
SM00054+1264-1292_1307-1335+|SM00150+88-189_195-295_301-401_407-505_511-612_618-718_724-824_830-930_936-1037_1151-1246+|SM01184+1339-1401+
|
PF00018+1-31+SH3_domain|PF00435+87-189_192-295_298-401_405-506_509-613_616-718_724-825_828-931_935-1038_1149-1247+Spectrin_repeat|PF08726+1339-1400+Ca2+_insensitive_EF_hand|PF13499+1267-1332+EF-hand_domain_pair
|
G3DSA:1.10.238.10:FF:000020+1254-1339+spectrin_alpha_chain,_non-erythrocytic_1|G3DSA:1.20.58.60:FF:000006+508-611+Spectrin_alpha_chain,_non-erythrocytic_1|G3DSA:1.20.58.60:FF:000007+400-507+Spectrin_alpha_chain_non-erythrocytic_1|G3DSA:1.20.58.60:FF:000013+296-397+Spectrin_alpha_chain,_non-erythrocytic_1|G3DSA:1.20.58.60:FF:000017+614-720+Spectrin_alpha_chain,_non-erythrocytic_1|G3DSA:1.20.58.60:FF:000020+721-825_826-931+Spectrin_alpha_chain,_non-erythrocytic_1|G3DSA:1.20.58.60:FF:000043+932-1041+Spectrin_alpha_chain,_non-erythrocytic_1|G3DSA:1.20.58.60:FF:000078+1145-1253+Spectrin_alpha_chain,_non-erythrocytic_1|G3DSA:1.20.58.60:FF:000258+88-295+Spectrin_alpha_chain
|
PTHR11915+46-1400+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
167-228
|
2.000
|
1-166;229-1402
|
1u4q_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.786
|
163941.280
|
5.380
|
-27.500
|
35.235
|
9.558
|
57.917
|
42.083
|
17.332
|
17.903
|
39.230
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
247.923
|
199.994
|
302.801
|
181.852
|
133.619
|
211.791
|
277.060
|
302.664
|
453.178
|
141.111
|
274.854
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.370
|
-0.274
|
-0.627
|
-0.477
|
0.679
|
0.398
|
0.408
|
— | — | — | — | — | — |
No JSON data available for plots.