SCN Proteipedia

Hg_chrom4_TN10mRNA_8615

Organism: Heterodera glycines Gene Locus: chr4:9446790-9478074 Feature type: polypeptide

Protein Sequence

Length: 3,108

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.943	1.01	1.328	0.211	1.882	2.219	0.479	1.609	0.93	1.452	1.014	1.23	0.965	0.297	1.589	0.671	0.607	0.624	1.238	0.53	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_8085	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-Not_Clustered	0.584

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	LGEV,RKKK,RRRK,RREKLLARRRH,KRLLMLGEQRKRKLE,RRRLEEAWVERRKVL,RRRHLMDRMAQRRERLK,RRNAHDIKAQRAKLKKV,KKSQLRDNWRALKTKADKR	—	—	—	—	—	—	0.000	—	—	0.235	0.220	0.010	0.725	0.182	0.251	0.240	0.040	0.551	0.081

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001280	3.000	2.000	Hsc_gene_23607.t1;Hsc_gene_23607.t2	Hsc_gene_11877.t1;Hsc_gene_11877.t2;Hsc_gene_11977.t1;Hsc_gene_13455.t1;Hsc_gene_19623.t1;Hsc_gene_23607.t1;Hsc_gene_23607.t2	—	P13395.2 Spectrin alpha chain [Drosophila melanogaster]	KAI1716487.1 spectrin repeat domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005509\|GO:0005515	GO:0005575_0.906\|GO:0110165_0.897\|GO:0005622_0.885\|GO:0043226_0.804\|GO:0008150_0.787\|GO:0005737_0.782\|GO:0043229_0.777\|GO:0043228_0.754\|GO:0043232_0.754\|GO:0009987_0.735\|GO:0016020_0.731\|GO:0003674_0.702\|GO:0071944_0.624\|GO:0071840_0.613\|GO:0016043_0.610\|GO:0005488_0.605\|GO:0005886_0.575\|GO:0005515_0.574\|GO:0005856_0.545\|GO:0006996_0.504	IPR001452+989-1048_992-1047_995-1040+\|IPR002017+68-170_173-274_279-380_385-484_491-594_596-699_703-805_810-911_914-979_1096-1198_1201-1304_1307-1410_1414-1515_1518-1622_1625-1727_1733-1834_1837-1940_1944-2047_2059-2160_2172-2270_2408-2509_2512-2615_2619-2722_2734-2835_2847-2945+\|IPR002048+2283-2318_2287-2315_2287-2355_2290-2355_2326-2361_2330-2358_2958-2993_2962-2990_2962-3030_2965-3030_3001-3036_3005-3033+\|IPR011992+2269-2404_2944-3105+\|IPR014837+3037-3106+\|IPR018159+68-277_70-169_173-384_175-275_281-381_387-487_491-701_493-593_599-698_702-913_704-804_810-910_916-1091_1095-1307_1097-1198_1204-1304_1308-1516_1310-1410_1416-1514_1519-1730_1520-1621_1627-1727_1629-1835_1733-1833_1733-1940_1837-2048_1839-1939_1944-2163_1945-2046_2058-2272_2060-2160_2174-2269_2408-2508_2408-2615_2512-2723_2514-2614_2619-2838_2620-2721_2733-2947_2735-2835_2849-2944+\|IPR018247+2339-2351_3014-3026+\|IPR035825+993-1045+\|IPR036028+989-1061+	SM00054+2287-2315_2330-2358_2962-2990_3005-3033+\|SM00150+70-169_175-275_281-381_387-487_493-593_599-698_704-804_810-910_916-1091_1097-1198_1204-1304_1310-1410_1416-1514_1520-1621_1627-1727_1733-1833_1839-1939_1945-2046_2060-2160_2174-2269_2408-2508_2514-2614_2620-2721_2735-2835_2849-2944+\|SM00326+992-1047+\|SM01184+2362-2428_3037-3107+	PF00018+995-1040+SH3_domain\|PF00435+68-170_173-274_279-380_385-484_491-594_596-699_703-805_810-911_914-979_1096-1198_1201-1304_1307-1410_1414-1515_1518-1622_1625-1727_1733-1834_1837-1940_1944-2047_2059-2160_2172-2270_2408-2509_2512-2615_2619-2722_2734-2835_2847-2945+Spectrin_repeat\|PF08726+3037-3106+Ca2+_insensitive_EF_hand\|PF13499+2290-2355_2965-3030+EF-hand_domain_pair	G3DSA:1.10.238.10:FF:000020+2277-2362_2952-3037+spectrin_alpha_chain,_non-erythrocytic_1\|G3DSA:1.20.58.60:FF:000006+1517-1620+Spectrin_alpha_chain,_non-erythrocytic_1\|G3DSA:1.20.58.60:FF:000007+486-595_1409-1516+Spectrin_alpha_chain_non-erythrocytic_1\|G3DSA:1.20.58.60:FF:000013+378-483_1305-1406+Spectrin_alpha_chain,_non-erythrocytic_1\|G3DSA:1.20.58.60:FF:000017+700-806_1623-1729+Spectrin_alpha_chain,_non-erythrocytic_1\|G3DSA:1.20.58.60:FF:000020+66-170_171-275_596-699_807-911_1730-1834_1835-1940_2404-2509_2510-2615+Spectrin_alpha_chain,_non-erythrocytic_1\|G3DSA:1.20.58.60:FF:000035+2051-2167_2726-2842+Spectrin_alpha_chain,_non-erythrocytic_1\|G3DSA:1.20.58.60:FF:000043+1941-2050_2616-2725+Spectrin_alpha_chain,_non-erythrocytic_1\|G3DSA:1.20.58.60:FF:000078+2168-2276_2843-2951+Spectrin_alpha_chain,_non-erythrocytic_1\|G3DSA:1.20.58.60:FF:000258+1097-1304+Spectrin_alpha_chain\|G3DSA:2.30.30.40:FF:000154+991-1046+Alpha_spectrin,_isoform_C	PTHR11915+167-1145+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-41;307-354;838-965;1176-1237	4.000	42-306;355-837;966-1175;1238-3108	1u4q_B	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.829	363576.670	5.245	-78.000	36.293	10.103	57.690	42.310	17.696	18.597	38.449

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	orange	4308.508	3657.154	5625.727	3237.030	2767.869	3970.893	2920.655	3063.067	4221.999	6217.323	5362.184

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.393	-0.313	-0.690	-0.258	0.536	-0.433	-0.481	—	—	—	—	—	—

No JSON data available for plots.

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