Hg_chrom4_TN10mRNA_8616
Organism: Heterodera glycines Gene Locus: chr4:9478482-9490897 Feature type: polypeptideProtein Sequence
Length: 624
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.988 | 0.969 | 0.874 | 1.05 | 0.748 | 1.479 | 0.63 | 1.683 | 1.246 | 1.408 | 0.607 | 0.66 | 1.38 | 0.925 | 1.472 | 1.007 | 1.103 | 0.898 | 0.986 | 0.424 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8086
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.510
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
58-78
|
1.000
|
71-92
|
0.981
|
— | — |
0.000
|
— | — |
0.100
|
0.871
|
0.160
|
0.330
|
0.060
|
0.086
|
0.206
|
0.083
|
0.088
|
0.102
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002138
|
3.000
|
1.000
|
Hsc_gene_23606.t1
|
Hsc_gene_23606.t1
|
— |
A6H751.1 Folylpolyglutamate synthase, mitochondrial [Bos taurus]
|
KAI1724250.1 putative folylpolyglutamate synthase [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004326|GO:0005524|GO:0009058|GO:0009396|GO:0016881
|
GO:0005575_0.788|GO:0110165_0.778|GO:0008150_0.726|GO:0005622_0.686|GO:0009987_0.673|GO:0016020_0.650|GO:0003674_0.644|GO:0005737_0.617|GO:0043226_0.572|GO:0043229_0.557|GO:0008152_0.543|GO:0043227_0.541|GO:0044237_0.524|GO:0009058_0.520|GO:0043231_0.513|GO:0003824_0.504
|
IPR001645+92-623_138-402+|IPR018109+161-184_259-274+|IPR036565+106-402_127-391+|IPR036615+454-622_456-624+
|
— | — | — |
PTHR11136+92-623+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-624
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.779
|
69801.910
|
8.617
|
22.500
|
23.878
|
11.058
|
47.596
|
52.404
|
14.583
|
9.295
|
50.321
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
157.149
|
157.168
|
224.512
|
193.016
|
147.126
|
227.770
|
245.098
|
188.470
|
56.415
|
126.530
|
96.481
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.284
|
— | — |
-0.426
|
0.647
|
— |
-0.383
|
0.522
|
— | — | — | — | — |
No JSON data available for plots.