Hg_chrom4_TN10mRNA_8618
Organism: Heterodera glycines Gene Locus: chr4:9541199-9548125 Feature type: polypeptideProtein Sequence
Length: 233
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.048 | 1.198 | 1.171 | 0.148 | 0.93 | 1.871 | 0.869 | 2.575 | 1.24 | 1.16 | 0.0 | 2.525 | 0.835 | 0.825 | 1.226 | 0.92 | 0.774 | 1.236 | 0.33 | 0.631 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8088
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.903
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.679
|
0.696
|
0.081
|
0.684
|
0.065
|
0.076
|
0.103
|
0.040
|
0.078
|
0.146
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008986
|
1.000
|
1.000
|
Hsc_gene_23609.t1
|
Hsc_gene_23609.t1
|
— |
A7SVT1.1 Protein adenylyltransferase Fic [Nematostella vectensis]
|
XP_054724857.1 protein adenylyltransferase Fic-like [Uloborus diversus]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.933|GO:0003674_0.876|GO:0003824_0.803|GO:0016740_0.699|GO:0008152_0.669|GO:0005575_0.668|GO:0016772_0.662|GO:0016779_0.654|GO:0110165_0.652|GO:0070566_0.650|GO:0070733_0.650|GO:0044238_0.628|GO:0016020_0.587|GO:0043170_0.579|GO:0050896_0.571|GO:0019538_0.563|GO:0043412_0.532|GO:0036211_0.530|GO:0006950_0.521|GO:0071944_0.520|GO:0005488_0.517|GO:0018117_0.510|GO:0018175_0.510|GO:0005886_0.503
|
IPR003812+79-223_84-184+|IPR036597+28-233_75-222+|IPR040198+43-223+
|
— |
PF02661+84-184+Fic/DOC_family
|
— |
PTHR13504+43-223+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-63
|
1.000
|
64-233
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.688
|
25719.840
|
5.037
|
-8.000
|
23.176
|
10.730
|
46.781
|
53.219
|
11.159
|
12.017
|
51.931
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
230.487
|
277.024
|
148.109
|
95.534
|
76.886
|
115.480
|
63.672
|
147.298
|
22.843
|
644.746
|
378.216
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.136
|
-1.673
|
-0.521
|
-0.347
|
0.602
|
-0.849
|
— |
-1.067
|
-4.958
|
— | — | — | — |
No JSON data available for plots.