SCN Proteipedia

Hg_chrom4_TN10mRNA_8620

Organism: Heterodera glycines Gene Locus: chr4:9555229-9571872 Feature type: polypeptide

Protein Sequence

Length: 1,315

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.964	0.937	1.355	0.498	1.496	1.716	0.661	2.015	1.048	1.408	0.645	1.61	1.056	0.512	1.474	0.695	0.723	0.726	0.994	0.693	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_8090	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	RREKLLARRRH,RRRHLMDRMAQRRERLK	—	—	—	—	—	—	0.000	—	—	0.243	0.200	0.009	0.512	0.141	0.116	0.120	0.072	0.383	0.081

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000311	1.000	8.000	Hsc_gene_11877.t1;Hsc_gene_11877.t2;Hsc_gene_11920.t1;Hsc_gene_11920.t2;Hsc_gene_11920.t3;Hsc_gene_11920.t4;Hsc_gene_11977.t1;Hsc_gene_19623.t1	Hsc_gene_11877.t1;Hsc_gene_11977.t1;Hsc_gene_19623.t1;Hsc_gene_23607.t1	—	P13395.2 Spectrin alpha chain [Drosophila melanogaster]	KAI1716487.1 spectrin repeat domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0055085	GO:0005575_0.919\|GO:0110165_0.911\|GO:0005622_0.822\|GO:0008150_0.808\|GO:0016020_0.801\|GO:0009987_0.772\|GO:0043226_0.771\|GO:0005737_0.723\|GO:0043229_0.722\|GO:0071944_0.718\|GO:0003674_0.717\|GO:0005886_0.654\|GO:0071840_0.576\|GO:0016043_0.571\|GO:0005488_0.517\|GO:0043228_0.511\|GO:0043232_0.511	IPR002017+49-147_150-249_261-362_367-465_472-575_577-645_877-968_1017-1088+\|IPR002067+1122-1140_1167-1185_1221-1243+\|IPR018108+1107-1194_1109-1195_1212-1262+\|IPR018159+47-146_52-250_152-254_261-471_263-363_369-468_369-577_474-574_580-703_875-971_876-1088_1020-1111+\|IPR023395+1078-1268_1090-1262+\|IPR036597+678-815_720-809+	SM00150+47-146_152-254_263-363_369-468_474-574_580-703_875-971_1020-1111+	PF00153+1109-1195_1212-1262+Mitochondrial_carrier_protein\|PF00435+49-147_150-249_261-362_367-465_472-575_577-645_877-968_1017-1088+Spectrin_repeat	G3DSA:1.20.58.60:FF:000007+467-576+Spectrin_alpha_chain_non-erythrocytic_1\|G3DSA:1.20.58.60:FF:000020+39-147+Spectrin_alpha_chain,_non-erythrocytic_1	PTHR11915+140-645+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-43;606-709	2.000	44-605;710-1315	8iah_8	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.806	150917.490	5.167	-38.500	31.939	11.483	51.939	48.061	15.513	16.426	43.498

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1187.220	1858.074	1935.856	1459.750	978.169	1245.247	1270.295	1474.517	1231.961	436.900	777.640

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.170	-0.485	-0.299	-0.609	0.363	—	—	—	—	—	—	—	—

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