Hg_chrom4_TN10mRNA_8621
Organism: Heterodera glycines Gene Locus: chr4:9575075-9581461 Feature type: polypeptideProtein Sequence
Length: 470
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.841 | 1.039 | 0.851 | 1.027 | 1.17 | 0.873 | 0.811 | 1.915 | 1.04 | 1.351 | 1.096 | 0.626 | 0.946 | 0.859 | 1.303 | 1.003 | 0.907 | 0.806 | 1.637 | 0.688 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8091
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_11876
|
— |
3-Not_Clustered
|
0.900
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.080
|
0.158
|
0.024
|
0.327
|
0.269
|
0.132
|
0.233
|
0.020
|
0.269
|
0.505
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002139
|
1.000
|
3.000
|
Hsc_gene_11876.t1;Hsc_gene_11876.t2;Hsc_gene_23612.t1
|
Hsc_gene_11876.t1;Hsc_gene_11876.t2;Hsc_gene_11877.t1;Hsc_gene_11877.t2;Hsc_gene_19623.t1;Hsc_gene_23607.t1;Hsc_gene_23607.t2
|
— |
P13395.2 Spectrin alpha chain [Drosophila melanogaster]
|
KAH7727929.1 spectrin alpha chainerythrocyte [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0005515|GO:0006508
|
GO:0008150_0.761|GO:0005575_0.746|GO:0110165_0.731|GO:0003674_0.606
|
IPR001254+207-455_208-460_210-261_304-455+|IPR001314+244-259_323-337_410-422+|IPR002017+32-117+|IPR009003+194-461+|IPR018114+254-259+|IPR018159+19-118_31-141+|IPR043504+200-461+|IPR051487+197-462+
|
SM00020+207-455+|SM00150+19-118+
|
PF00089+210-261_304-455+Trypsin|PF00435+32-117+Spectrin_repeat
|
— |
PTHR24256+197-462+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-16
|
1.000
|
17-470
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.816
|
52951.350
|
8.585
|
18.000
|
29.149
|
11.702
|
49.574
|
50.426
|
17.447
|
11.702
|
48.511
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
998.780
|
297.996
|
531.801
|
266.846
|
242.695
|
375.378
|
349.597
|
264.838
|
2753.670
|
1430.980
|
1997.847
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.606
|
-0.297
|
-0.886
|
-0.169
|
0.644
|
— |
-0.608
|
0.544
|
— |
-3.211
|
— | — |
-4.495
|
No JSON data available for plots.