Hg_chrom4_TN10mRNA_8623
Organism: Heterodera glycines Gene Locus: chr4:9584647-9586058 Feature type: polypeptideProtein Sequence
Length: 160
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.581 | 0.872 | 1.932 | 0.647 | 0.625 | 0.801 | 0.67 | 0.938 | 0.972 | 1.689 | 1.231 | 0.735 | 1.389 | 0.841 | 1.276 | 0.714 | 0.922 | 1.231 | 0.0 | 1.103 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8093
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.976
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
KKKR,KRRS
|
— | — | — | — |
1-20
|
0.970
|
1.000
|
0.000
|
0.000
|
0.162
|
0.496
|
0.323
|
0.177
|
0.388
|
0.073
|
0.139
|
0.090
|
0.246
|
0.916
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008988
|
1.000
|
1.000
|
Hsc_gene_23615.t1
|
Hsc_gene_11881.t1;Hsc_gene_21010.t1;Hsc_gene_23613.t1;Hsc_gene_23615.t1
|
— |
Q22285.1 Transthyretin-like protein 46 [Caenorhabditis elegans]
|
AVA09669.1 putative effector protein [Heterodera avenae];AVA09712.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009986
|
GO:0008150_0.922|GO:0005575_0.907|GO:0110165_0.903|GO:0009987_0.850|GO:0003674_0.834|GO:0016020_0.822|GO:0043226_0.778|GO:0005488_0.763|GO:0043227_0.743|GO:0005515_0.739|GO:0071840_0.736|GO:0032502_0.731|GO:0048856_0.731|GO:0016043_0.729|GO:0051179_0.712|GO:0006810_0.709|GO:0051234_0.709|GO:0006996_0.692|GO:0061024_0.688|GO:0071705_0.688|GO:0008219_0.687|GO:0012501_0.686|GO:0033036_0.686|GO:0006915_0.683|GO:0016192_0.682|GO:0016050_0.678|GO:0005102_0.676|GO:0098657_0.676|GO:0010876_0.675|GO:0006900_0.674|GO:0006869_0.673|GO:0006897_0.673|GO:0010324_0.673|GO:0006909_0.670|GO:0006910_0.670|GO:0008037_0.670|GO:0015748_0.670|GO:0015914_0.670|GO:0015917_0.670|GO:0038024_0.670|GO:0043277_0.670|GO:0043654_0.670|GO:0060090_0.670|GO:1902742_0.670|GO:0042802_0.669|GO:0008289_0.661|GO:0042803_0.657|GO:0046983_0.657|GO:0005543_0.656|GO:0001786_0.650|GO:0005124_0.650|GO:0030674_0.650|GO:0072341_0.650|GO:0005576_0.620|GO:0031982_0.578|GO:0043230_0.562|GO:0065010_0.562|GO:1903561_0.562|GO:0009986_0.557
|
IPR001534+8-141_28-107+|IPR038479+21-137+
|
— |
PF01060+28-107+Transthyretin-like_family
|
— |
PTHR21700+8-141+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-160
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.572
|
18154.840
|
7.213
|
1.500
|
30.625
|
10.625
|
48.125
|
51.875
|
16.250
|
14.375
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
2076.822
|
316.665
|
3522.746
|
330.183
|
1020.263
|
2660.944
|
3359.541
|
6320.217
|
1968.204
|
1035.986
|
1435.508
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.249
|
— |
-3.308
|
1.596
|
1.397
|
0.347
|
1.142
|
-0.768
|
— |
-2.438
|
— | — | — |