Hg_chrom4_TN10mRNA_8624
Organism: Heterodera glycines Gene Locus: chr4:9589948-9592571 Feature type: polypeptideProtein Sequence
Length: 344
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.811 | 1.69 | 1.533 | 0.702 | 1.744 | 0.894 | 0.554 | 0.872 | 1.292 | 1.021 | 0.881 | 1.368 | 1.453 | 0.447 | 0.831 | 0.789 | 0.762 | 1.101 | 1.118 | 0.855 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8094
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.510
|
0.194
|
0.018
|
0.677
|
0.147
|
0.114
|
0.119
|
0.009
|
0.166
|
0.122
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003928
|
2.000
|
1.000
|
Hsc_gene_21011.t1
|
— | — | — |
KAI3417518.1 Ubiquitin carboxyl-terminal hydrolase 7 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.938|GO:0009987_0.865|GO:0065007_0.767|GO:0050789_0.755|GO:0050794_0.738|GO:0071840_0.535|GO:0016043_0.531|GO:0032501_0.521|GO:0032502_0.517|GO:0048856_0.517
|
IPR000210+174-243_175-273_177-271+|IPR002083+30-159_34-149_53-161+|IPR008974+13-170+|IPR011333+172-274_178-271+
|
SM00225+175-273+
|
PF00651+177-271+BTB/POZ_domain|PF22486+34-149+MATH_domain
|
— |
PTHR47022+28-303+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-24
|
1.000
|
25-344
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.912
|
39301.850
|
4.222
|
-28.000
|
30.523
|
11.337
|
51.453
|
48.547
|
11.628
|
18.895
|
49.128
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
20.997
|
130.618
|
63.932
|
8.622
|
4.453
|
6.771
|
23.115
|
1.679
|
1.382
|
1.129
|
1.237
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.265
|
-4.058
|
-2.778
|
— | — |
1.781
|
— |
3.929
|
— | — | — | — | — |
No JSON data available for plots.