SCN Proteipedia

Hg_chrom4_TN10mRNA_8627

Organism: Heterodera glycines Gene Locus: chr4:9647935-9671853 Feature type: polypeptide

Protein Sequence

Length: 1,842

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.821	0.821	0.967	1.011	0.977	1.434	0.743	1.439	1.436	1.196	0.666	1.245	1.116	1.054	1.584	0.969	0.899	0.913	0.585	0.719	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_8097	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	endoplasmic_reticulum	—	RRRR,RPQKRKP	—	—	44-124	1.000	—	—	0.000	—	—	0.281	0.270	0.072	0.296	0.392	0.325	0.284	0.125	0.245	0.073

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002140	1.000	3.000	Hsc_gene_13430.t1;Hsc_gene_13434.t1;Hsc_gene_20742.t1	Hsc_gene_13430.t1;Hsc_gene_13434.t1;Hsc_gene_13435.t1;Hsc_gene_13436.t1	—	O14802.2 DNA-directed RNA polymerase III subunit RPC1 [Homo sapiens]	KAF7634612.1 DNA-directed RNA polymerase subunit [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0003899\|GO:0004672\|GO:0005524\|GO:0005789\|GO:0006351\|GO:0006468\|GO:0006506	GO:0005575_0.939\|GO:0110165_0.879\|GO:0008150_0.855\|GO:0009987_0.827\|GO:0005622_0.771\|GO:0065007_0.760\|GO:0050789_0.749\|GO:0050794_0.729\|GO:0050896_0.710\|GO:0003674_0.669\|GO:0051716_0.645\|GO:0007154_0.629\|GO:0023052_0.622\|GO:0007165_0.601\|GO:0016020_0.553\|GO:0003824_0.532\|GO:0016740_0.528\|GO:0008152_0.516\|GO:0006950_0.509\|GO:0035556_0.508\|GO:0048518_0.508	IPR000719+202-471_202-472_205-465+\|IPR007081+554-969+\|IPR008271+326-338+\|IPR009348+1456-1729_1741-1831+\|IPR009580+1156-1266+\|IPR011009+205-465+\|IPR017441+208-229+\|IPR035698+676-1014+\|IPR052468+105-481+	SM00220+202-471+	PF00069+205-465+Protein_kinase_domain\|PF04998+554-969+RNA_polymerase_Rpb1,_domain_5\|PF06218+1456-1729_1741-1831+Nitrogen_permease_regulator_2\|PF06699+1156-1266+GPI_biosynthesis_protein_family_Pig-F	G3DSA:1.10.150.390:FF:000004+967-1024+DNA-directed_RNA_polymerase_subunit\|G3DSA:3.30.200.20:FF:000040+180-279+Dual_specificity_mitogen-activated_protein_kinase_kinase	PTHR47238+105-481+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-130;542-587;1033-1116;1312-1451	4.000	131-541;588-1032;1117-1311;1452-1842	9lxo_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.748	206988.810	8.182	44.500	26.221	10.098	47.611	52.389	15.038	11.183	48.860

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	grey	2665.853	3479.530	2404.411	2932.990	3395.432	3139.182	4554.775	2148.589	1511.833	2258.642	1938.581

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.763	-0.384	0.396	0.179	—	0.547	-0.653	1.227	—	—	—	—	—

No JSON data available for plots.

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