Hg_chrom4_TN10mRNA_8630
Organism: Heterodera glycines Gene Locus: chr4:9684753-9685909 Feature type: polypeptideProtein Sequence
Length: 274
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.976 | 1.358 | 0.995 | 0.378 | 0.912 | 0.749 | 0.434 | 2.372 | 1.298 | 0.937 | 0.774 | 1.288 | 1.115 | 1.123 | 1.415 | 1.46 | 0.897 | 0.885 | 0.842 | 0.859 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8100
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.729
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKKIEILQKCRKRKFL,KKEIYFFTNIIRNLMERKK
|
47-97
|
0.749
|
— | — | — | — |
0.000
|
— | — |
0.816
|
0.126
|
0.052
|
0.287
|
0.039
|
0.028
|
0.037
|
0.018
|
0.032
|
0.126
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001232
|
4.000
|
1.000
|
Hsc_gene_11986.t1
|
Hsc_gene_11986.t1;Hsc_gene_11986.t2;Hsc_gene_11986.t3;Hsc_gene_17664.t1;Hsc_gene_18920.t1;Hsc_gene_18920.t2;Hsc_gene_20657.t1;Hsc_gene_23806.t1;Hsc_gene_2931.t1;Hsc_gene_3996.t1;Hsc_gene_6143.t1;Hsc_gene_6144.t1;Hsc_gene_7268.t1;Hsc_gene_7268.t2
|
— | — |
KAI3411724.1 hypothetical protein GPALN_001791 [Globodera pallida]
|
RYY92845
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-20
|
1.000
|
21-274
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.845
|
30916.840
|
8.659
|
9.500
|
27.737
|
12.774
|
52.190
|
47.810
|
16.788
|
10.949
|
51.825
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
12.243
|
1.071
|
13.090
|
14.913
|
6.402
|
3.690
|
2.021
|
3.880
|
35.679
|
9.904
|
20.950
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.382
|
3.665
|
— |
-1.248
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.