Hg_chrom4_TN10mRNA_8631
Organism: Heterodera glycines Gene Locus: chr4:9736013-9747254 Feature type: polypeptideProtein Sequence
Length: 681
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.007 | 0.922 | 0.801 | 0.658 | 0.93 | 1.13 | 0.804 | 1.175 | 1.534 | 1.389 | 0.601 | 1.641 | 1.387 | 0.932 | 1.319 | 0.818 | 1.252 | 0.979 | 0.452 | 0.389 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8101
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — |
1-22
|
0.996
|
1.000
|
0.000
|
0.000
|
0.296
|
0.415
|
0.312
|
0.217
|
0.805
|
0.254
|
0.224
|
0.512
|
0.216
|
0.117
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000575
|
5.000
|
2.000
|
Hsc_gene_13435.t1;Hsc_gene_13455.t1
|
— | — |
O14802.2 DNA-directed RNA polymerase III subunit RPC1 [Homo sapiens]
|
KAF7634612.1 DNA-directed RNA polymerase subunit [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0003899|GO:0006351
|
GO:0005575_0.907|GO:0110165_0.814|GO:0016020_0.710|GO:0005622_0.696|GO:0008150_0.672|GO:0043226_0.663|GO:0043229_0.635|GO:0009987_0.613|GO:0043227_0.576|GO:0043231_0.558
|
IPR007081+191-523+|IPR007083+142-190+|IPR038120+130-189+|IPR045867+143-434+
|
— |
PF04998+191-523+RNA_polymerase_Rpb1,_domain_5|PF05000+142-190+RNA_polymerase_Rpb1,_domain_4
|
— |
PTHR19376+143-434+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
652-681
|
1.000
|
1-651
|
9lxo_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.693
|
75157.790
|
7.930
|
11.000
|
22.761
|
9.251
|
44.493
|
55.507
|
12.775
|
9.985
|
50.367
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
1656.078
|
1291.375
|
1116.969
|
1171.528
|
1650.612
|
1427.437
|
2275.217
|
1136.253
|
1055.824
|
2677.452
|
1982.468
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.440
|
-0.278
|
0.178
|
0.463
|
-0.195
|
0.684
|
-0.434
|
1.145
|
— | — | — | — | — |