Hg_chrom4_TN10mRNA_8632
Organism: Heterodera glycines Gene Locus: chr4:9763759-9767380 Feature type: polypeptideProtein Sequence
Length: 172
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.676 | 0.946 | 0.423 | 0.2 | 0.678 | 1.491 | 0.623 | 3.488 | 0.904 | 1.179 | 0.881 | 2.052 | 1.292 | 1.006 | 1.542 | 0.415 | 1.334 | 0.705 | 3.578 | 1.539 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8102
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
2-27
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.053
|
0.935
|
0.005
|
0.115
|
0.074
|
0.011
|
0.036
|
0.004
|
0.044
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002141
|
2.000
|
2.000
|
Hsc_gene_13445.t1;Hsc_gene_14172.t1
|
— | — | — |
NP_741000.2 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial [Caenorhabditis elegans];CCD65050.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial [Caenorhabditis elegans]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR019173+9-148_10-149+
|
— |
PF09781+9-148+NADH:ubiquinone_oxidoreductase,_NDUFB5/SGDH_subunit
|
— |
PTHR13178+10-149+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-172
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.546
|
20677.820
|
10.511
|
18.000
|
26.744
|
21.512
|
47.674
|
52.326
|
20.349
|
6.395
|
38.953
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
brown
|
341.509
|
127.270
|
293.267
|
471.288
|
800.735
|
661.755
|
983.379
|
325.210
|
89.830
|
53.143
|
68.866
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.975
|
1.751
|
0.793
|
0.734
|
-0.260
|
0.582
|
-1.136
|
1.742
|
— | — |
4.498
|
— | — |
No JSON data available for plots.