Hg_chrom4_TN10mRNA_8633
Organism: Heterodera glycines Gene Locus: chr4:9773434-9779316 Feature type: polypeptideProtein Sequence
Length: 687
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.779 | 1.456 | 0.926 | 0.653 | 1.82 | 0.672 | 0.555 | 1.164 | 1.326 | 1.121 | 1.588 | 1.884 | 1.739 | 0.504 | 0.802 | 1.061 | 0.716 | 0.64 | 1.008 | 0.428 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8103
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
PSPKRHR,KKENAEKVKESREKWR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.673
|
0.131
|
0.011
|
0.635
|
0.133
|
0.138
|
0.064
|
0.016
|
0.100
|
0.085
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008991
|
1.000
|
1.000
|
Hsc_gene_13449.t1
|
— | — |
Q2LE78.1 BTB/POZ domain-containing protein 6 [Xenopus laevis]
|
KAI3415278.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.797|GO:0110165_0.777|GO:0005622_0.751|GO:0008150_0.710|GO:0043226_0.665|GO:0043229_0.653|GO:0005737_0.610|GO:0009987_0.586|GO:0016020_0.550
|
IPR000210+158-269_160-240_160-271+|IPR002083+557-635+|IPR008974+425-654+|IPR011333+130-299_144-266+|IPR011705+277-387_286-384+
|
SM00225+160-271+|SM00875+277-387+
|
PF00651+158-269+BTB/POZ_domain|PF07707+286-384+BTB_And_C-terminal_Kelch|PF22486+557-635+MATH_domain
|
— |
PTHR45774+93-408+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-149
|
1.000
|
150-687
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.538
|
78727.760
|
6.230
|
-3.000
|
32.751
|
11.354
|
53.421
|
46.579
|
16.739
|
16.012
|
43.231
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
purple
|
43.760
|
21.016
|
29.376
|
23.665
|
27.310
|
29.596
|
102.428
|
15.820
|
0.514
|
97.613
|
55.999
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
1.796
|
-1.014
|
2.834
|
-6.917
|
4.938
|
— | — | — |
No JSON data available for plots.