Hg_chrom4_TN10mRNA_8634
Organism: Heterodera glycines Gene Locus: chr4:9782582-9784671 Feature type: polypeptideProtein Sequence
Length: 224
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.779 | 1.038 | 0.244 | 0.77 | 0.818 | 0.343 | 0.797 | 0.0 | 0.992 | 1.569 | 0.812 | 2.626 | 3.472 | 0.429 | 0.547 | 1.212 | 0.732 | 1.962 | 0.0 | 0.919 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8104
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— | — |
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.138
|
0.110
|
0.028
|
0.113
|
0.645
|
0.360
|
0.333
|
0.004
|
0.374
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003929
|
1.000
|
2.000
|
Hsc_gene_11981.t1;Hsc_gene_11981.t2
|
— | — | — |
NP_001294570.1 Zinc transporter ZIP8 [Caenorhabditis elegans];CDH93373.1 Zinc transporter ZIP8 [Caenorhabditis elegans]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0030001|GO:0046873|GO:0055085
|
GO:0008150_0.890|GO:0005575_0.815|GO:0110165_0.813|GO:0009987_0.782|GO:0016020_0.780|GO:0071944_0.703|GO:0006810_0.699|GO:0051179_0.699|GO:0051234_0.699|GO:0005886_0.695|GO:0003674_0.681|GO:0055085_0.664|GO:0005215_0.613|GO:0022857_0.613|GO:0006811_0.586|GO:0034220_0.586|GO:0098660_0.578|GO:0006812_0.569|GO:0098655_0.569|GO:0098662_0.563|GO:0030001_0.559|GO:0015075_0.552|GO:0008324_0.544|GO:0000041_0.540|GO:0006829_0.526|GO:0071577_0.526
|
IPR003689+72-212+|IPR050799+69-219+
|
— |
PF02535+72-212+ZIP_Zinc_transporter
|
— |
PTHR12191+69-219+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-224
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.787
|
24896.660
|
8.599
|
4.000
|
14.286
|
15.625
|
33.036
|
66.964
|
8.036
|
6.250
|
49.554
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
445.750
|
36.303
|
96.445
|
120.919
|
221.979
|
125.251
|
312.731
|
38.136
|
26.005
|
1573.743
|
910.427
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.180
|
1.599
|
0.434
|
0.844
|
-0.810
|
1.330
|
-1.826
|
3.180
|
— | — | — | — | — |
No JSON data available for plots.