Hg_chrom4_TN10mRNA_8636
Organism: Heterodera glycines Gene Locus: chr4:9788068-9789219 Feature type: polypeptideProtein Sequence
Length: 159
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.804 | 0.439 | 0.8 | 1.084 | 0.629 | 0.968 | 0.374 | 1.887 | 2.096 | 1.275 | 0.953 | 2.22 | 0.874 | 0.726 | 1.669 | 1.078 | 1.134 | 1.334 | 0.484 | 0.37 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8106
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.956
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
mitochondrion
|
— | — |
46-87
|
0.864
|
— | — | — | — |
0.000
|
— | — |
0.466
|
0.530
|
0.008
|
0.427
|
0.039
|
0.034
|
0.045
|
0.040
|
0.110
|
0.144
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000575
|
5.000
|
2.000
|
Hsc_gene_13435.t1;Hsc_gene_13455.t1
|
Hsc_gene_11980.t1;Hsc_gene_11980.t2;Hsc_gene_13435.t1
|
— |
O14802.2 DNA-directed RNA polymerase III subunit RPC1 [Homo sapiens]
|
KAF7634612.1 DNA-directed RNA polymerase subunit [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0003899|GO:0006351
|
GO:0005575_0.901|GO:0110165_0.831|GO:0005622_0.774|GO:0016020_0.714|GO:0043226_0.708|GO:0043229_0.694|GO:0008150_0.660|GO:0043227_0.641|GO:0043231_0.629|GO:0009987_0.596|GO:0005634_0.514|GO:0008152_0.507
|
IPR007081+1-84+|IPR045867+1-100+
|
— |
PF04998+1-84+RNA_polymerase_Rpb1,_domain_5
|
— |
PTHR19376+1-100+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-159
|
4a93_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.536
|
17985.310
|
10.364
|
13.000
|
26.415
|
8.805
|
46.541
|
53.459
|
18.239
|
8.176
|
46.541
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
166.307
|
243.084
|
236.614
|
168.071
|
161.110
|
131.006
|
160.504
|
164.818
|
62.042
|
206.608
|
144.651
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.267
|
-0.669
|
-0.386
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.