Hg_chrom4_TN10mRNA_8637
Organism: Heterodera glycines Gene Locus: chr4:9797916-9800581 Feature type: polypeptideProtein Sequence
Length: 218
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.747 | 0.533 | 1.501 | 0.475 | 2.064 | 2.0 | 0.437 | 2.982 | 1.325 | 1.426 | 1.46 | 1.079 | 0.637 | 0.265 | 1.03 | 0.459 | 0.752 | 0.556 | 1.411 | 0.54 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8107
|
— | — |
1.444
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.489
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.170
|
0.301
|
0.018
|
0.737
|
0.120
|
0.077
|
0.275
|
0.017
|
0.120
|
0.191
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003930
|
1.000
|
2.000
|
Hsc_gene_11980.t1;Hsc_gene_11980.t2
|
— | — |
P13395.2 Spectrin alpha chain [Drosophila melanogaster]
|
KAI1716487.1 spectrin repeat domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.906|GO:0110165_0.902|GO:0005622_0.892|GO:0005737_0.818|GO:0043226_0.805|GO:0008150_0.785|GO:0043229_0.764|GO:0009987_0.735|GO:0016020_0.732|GO:0003674_0.689|GO:0043228_0.664|GO:0043232_0.664|GO:0005488_0.627|GO:0071944_0.625|GO:0005515_0.608|GO:0071840_0.595|GO:0016043_0.581|GO:0005886_0.546
|
IPR002017+27-120_134-192+|IPR018159+27-189_29-120_121-208+
|
SM00150+29-120_121-208+
|
PF00435+27-120_134-192+Spectrin_repeat
|
— |
PTHR11915+7-121+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
192-218
|
1.000
|
1-191
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.955
|
25714.920
|
5.551
|
-6.500
|
41.284
|
11.927
|
59.174
|
40.826
|
20.642
|
20.642
|
34.862
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
554.111
|
60.204
|
77.029
|
70.415
|
92.664
|
66.132
|
56.587
|
68.378
|
1844.242
|
856.777
|
1279.976
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.364
|
-0.472
|
— | — | — | — |
-4.535
|
— | — | — |
No JSON data available for plots.