Hg_chrom4_TN10mRNA_8638
Organism: Heterodera glycines Gene Locus: chr4:9820237-9821360 Feature type: polypeptideProtein Sequence
Length: 282
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.072 | 0.99 | 0.774 | 0.611 | 0.946 | 1.182 | 1.857 | 0.887 | 1.34 | 0.863 | 0.698 | 1.46 | 1.379 | 0.614 | 1.303 | 1.114 | 0.639 | 0.752 | 0.273 | 0.521 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8108
|
— | — |
1.778
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
SRGRPNNDGGGTSGGRGGAGQKRGGGRGGGRGGGKGNGRGGGSGGRGGR
|
— | — | — | — |
1-26
|
0.949
|
1.000
|
0.000
|
0.000
|
0.643
|
0.117
|
0.032
|
0.583
|
0.368
|
0.032
|
0.112
|
0.012
|
0.143
|
0.155
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001056
|
4.000
|
1.000
|
Hsc_gene_13472.t1
|
— | — |
O61998.2 Heat shock protein 90 [Brugia pahangi]
|
ACR57216.1 Hsp90 [Heterodera glycines]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
|
GO:0005575_0.836|GO:0110165_0.836|GO:0008150_0.731|GO:0005622_0.669|GO:0009987_0.656|GO:0003674_0.645|GO:0005737_0.625|GO:0016020_0.608|GO:0043226_0.566|GO:0005488_0.552|GO:0050896_0.537|GO:0071944_0.518|GO:0043229_0.512
|
IPR001404+20-182+|IPR019805+39-48+|IPR020575+19-39_31-180_40-62+|IPR036890+17-189_24-186+
|
— | — |
G3DSA:3.30.565.10:FF:000357+17-188+Heat_shock_protein_HSP_90-beta
|
PTHR11528+20-182+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
204-282
|
1.000
|
1-203
|
4gqt_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.937
|
29768.520
|
8.346
|
5.500
|
22.695
|
8.865
|
43.262
|
56.738
|
12.766
|
9.929
|
54.965
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
red
|
31.744
|
14.171
|
4.484
|
12.495
|
14.893
|
9.290
|
138.570
|
87.490
|
0.514
|
32.971
|
19.061
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.887
|
— |
1.583
|
— | — |
3.914
|
3.142
|
0.804
|
— |
4.016
|
— | — | — |