Hg_chrom4_TN10mRNA_8639
Organism: Heterodera glycines Gene Locus: chr4:9899809-9902694 Feature type: polypeptideProtein Sequence
Length: 138
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.674 | 1.011 | 0.395 | 1.999 | 0.483 | 1.486 | 0.776 | 2.536 | 0.644 | 0.783 | 1.757 | 1.279 | 1.006 | 1.254 | 2.218 | 0.725 | 0.475 | 0.659 | 2.787 | 0.639 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8109
|
— | — |
2.111
|
2.000
|
2.000
|
1.000
|
2.000
|
5.000
|
2.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.751
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKCPILAWAAKFSKKLGRK,KKLGRKCPNRKCPGRKCRA
|
16-36
|
0.862
|
7-35
|
0.978
|
— | — |
0.000
|
— | — |
0.614
|
0.235
|
0.033
|
0.396
|
0.037
|
0.042
|
0.019
|
0.000
|
0.038
|
0.117
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002141
|
2.000
|
2.000
|
Hsc_gene_13445.t1;Hsc_gene_14172.t1
|
Hsc_gene_15857.t1
|
— | — |
KAF7624766.1 hypothetical protein Mgra_00009955 [Meloidogyne graminicola]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
136-138
|
1.000
|
1-135
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.938
|
16240.990
|
11.208
|
27.500
|
32.609
|
14.493
|
50.725
|
49.275
|
27.536
|
5.072
|
43.478
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
magenta
|
230.312
|
103.764
|
205.353
|
381.901
|
443.695
|
398.535
|
297.855
|
286.133
|
170.823
|
85.535
|
122.087
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.755
|
1.743
|
1.004
|
0.184
|
— |
-0.409
|
-0.584
|
— | — | — | — | — | — |
No JSON data available for plots.