Hg_chrom4_TN10mRNA_8640
Organism: Heterodera glycines Gene Locus: chr4:9907223-9909234 Feature type: polypeptideProtein Sequence
Length: 420
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.72 | 1.107 | 1.082 | 0.657 | 1.468 | 1.282 | 0.34 | 0.714 | 1.64 | 1.255 | 1.659 | 1.821 | 1.124 | 0.824 | 1.069 | 1.156 | 0.625 | 0.505 | 1.099 | 0.63 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8110
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKSK,KKAYPSLEFAGSEHFRRKV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.792
|
0.125
|
0.038
|
0.239
|
0.192
|
0.129
|
0.132
|
0.069
|
0.061
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000512
|
7.000
|
0.000
|
0.000
|
— | — | — |
KAF7635668.1 Dimer_Tnp_hAT domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677
|
GO:0005575_0.935|GO:0110165_0.930|GO:0005622_0.902|GO:0016020_0.867|GO:0043226_0.863|GO:0043229_0.855|GO:0003674_0.826|GO:0005488_0.814|GO:0043227_0.810|GO:0005737_0.794|GO:0043231_0.780|GO:0005515_0.779|GO:0005634_0.711|GO:0042802_0.669|GO:0031974_0.615|GO:0031981_0.615|GO:0043233_0.615|GO:0070013_0.615|GO:0005654_0.581
|
IPR003656+1-50_2-44+|IPR012337+120-362+|IPR036236+2-51+|IPR052717+141-353+
|
SM00614+2-46+
|
PF02892+2-44+BED_zinc_finger
|
— |
PTHR46169+141-353+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-420
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.712
|
48586.910
|
8.616
|
9.000
|
32.381
|
9.048
|
54.048
|
45.952
|
17.619
|
14.762
|
41.190
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
136.944
|
12.377
|
19.624
|
12.292
|
16.919
|
15.763
|
20.871
|
77.603
|
217.174
|
370.456
|
304.764
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2.196
|
-1.757
|
— |
-4.011
|
-4.134
|
-4.977
|
— |
No JSON data available for plots.