Hg_chrom4_TN10mRNA_8641
Organism: Heterodera glycines Gene Locus: chr4:9920280-9922800 Feature type: polypeptideProtein Sequence
Length: 148
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 2.514 | 0.471 | 0.86 | 0.466 | 0.113 | 1.559 | 0.885 | 2.365 | 1.502 | 0.913 | 0.205 | 1.59 | 0.938 | 1.819 | 0.965 | 0.772 | 0.665 | 0.717 | 1.04 | 0.199 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8111
|
— | — |
1.333
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — |
2-23
|
0.993
|
— | — | — | — |
0.000
|
— | — |
0.705
|
0.192
|
0.010
|
0.532
|
0.140
|
0.381
|
0.243
|
0.125
|
0.107
|
0.192
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008992
|
1.000
|
1.000
|
Hsc_gene_11985.t1
|
Hsc_gene_11985.t1
|
— | — |
MPC76509.1 F-box/WD repeat-containing protein 11 [Portunus trituberculatus]
|
No
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR001680+1-38_50-87_53-87_57-87+|IPR015943+5-127+|IPR036322+24-89+|IPR050995+17-90+
|
SM00320+1-38_50-87+
|
PF00400+53-87+WD_domain,_G-beta_repeat
|
— |
PTHR14604+17-90+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
129-148
|
1.000
|
1-128
|
6wnx_G
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.796
|
15282.520
|
7.979
|
4.500
|
16.216
|
10.135
|
33.784
|
66.216
|
10.811
|
5.405
|
60.811
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
lightgreen
|
153.288
|
67.582
|
67.421
|
101.328
|
123.695
|
137.592
|
57.129
|
44.428
|
107.946
|
364.984
|
254.825
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.447
|
0.697
|
— | — |
-1.260
|
-1.731
|
— | — | — | — | — | — |
No JSON data available for plots.