SCN Proteipedia

Hg_chrom4_TN10mRNA_8644

Organism: Heterodera glycines Gene Locus: chr4:10016275-10024818 Feature type: polypeptide

Protein Sequence

Length: 543

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.135	0.728	1.172	1.016	0.798	1.417	0.68	2.026	1.473	1.195	0.586	1.083	0.972	0.673	1.616	1.052	0.634	0.865	1.983	0.596	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_8114	—	—	1.222	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-J3_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.497	0.274	0.007	0.530	0.172	0.394	0.265	0.043	0.213	0.039

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008994	1.000	1.000	Hsc_gene_19622.t1	Hsc_gene_11982.t1;Hsc_gene_19622.t1	—	Q9UKB1.1 F-box/WD repeat-containing protein 11 [Homo sapiens]	KAI1724271.1 WD domain, g-beta repeat domain-containing protein [Ditylenchus destructor]	No	-0.070

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0046983	GO:0008150_0.852\|GO:0003674_0.705\|GO:0005575_0.704\|GO:0110165_0.703\|GO:0005488_0.621\|GO:0009987_0.621\|GO:0005622_0.616\|GO:0005515_0.551\|GO:0008152_0.550\|GO:0065007_0.543\|GO:0044238_0.535\|GO:0050789_0.527\|GO:0016020_0.514\|GO:0050794_0.509\|GO:0043226_0.504\|GO:0043170_0.503	IPR001680+193-230_203-230_233-270_236-270_240-279_273-310_274-310_280-319_316-353_320-353_323-362_356-393_358-393_363-402_396-433_397-433_403-434_445-482_448-482_452-482+\|IPR001810+67-113_71-113_73-113+\|IPR015943+187-485+\|IPR019775+257-271_297-311_340-354_380-394_420-434+\|IPR020472+257-271_340-354_380-394+\|IPR021977+27-66_30-66+\|IPR036047+63-188+\|IPR036322+191-482+\|IPR050995+12-485+	SM00256+73-113+\|SM00320+193-230_233-270_273-310_316-353_356-393_396-433_445-482+\|SM01028+27-66+	PF00400+203-230_236-270_274-310_320-353_358-393_397-433_448-482+WD_domain,_G-beta_repeat\|PF12125+30-66+D_domain_of_beta-TrCP\|PF12937+71-113+F-box-like	—	PTHR14604+12-485+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	524-543	1.000	1-523	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.646	61337.890	7.879	14.000	27.072	12.155	46.961	53.039	15.838	11.234	48.435

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	grey	933.510	723.365	801.768	942.597	1371.856	1322.858	1604.680	890.251	699.458	687.996	692.908

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	0.245	0.342	0.510	—	0.289	-0.675	0.992	—	—	—	—	—

No JSON data available for plots.

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