Hg_chrom4_TN10mRNA_8647
Organism: Heterodera glycines Gene Locus: chr4:10055363-10060300 Feature type: polypeptideProtein Sequence
Length: 285
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.694 | 0.326 | 1.467 | 0.726 | 1.053 | 0.72 | 1.211 | 1.404 | 1.637 | 0.996 | 1.063 | 1.651 | 1.072 | 0.877 | 1.432 | 1.053 | 0.805 | 0.691 | 0.54 | 0.826 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8117
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
endoplasmic_reticulum
|
nucleus
|
KRRVTIPGKLGFGDGGRKR,RRVTIPGKLGFGDGGRKRD
|
— | — | — | — |
1-18
|
0.985
|
1.000
|
0.000
|
0.000
|
0.136
|
0.403
|
0.027
|
0.299
|
0.931
|
0.251
|
0.230
|
0.074
|
0.427
|
0.320
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008995
|
1.000
|
1.000
|
Hsc_gene_22176.t1
|
Hsc_gene_22176.t1
|
— |
Q2KJC8.1 Peptidyl-prolyl cis-trans isomerase FKBP9 [Bos taurus]
|
KAI6209540.1 Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain-containing protein [Aphelenchoides besseyi]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003755
|
GO:0005575_0.770|GO:0110165_0.770|GO:0008150_0.650|GO:0005622_0.642|GO:0016020_0.642|GO:0003674_0.615|GO:0043226_0.562|GO:0043229_0.551|GO:0009987_0.550|GO:0043227_0.528|GO:0005737_0.525|GO:0043231_0.520
|
IPR001179+66-155_70-158_187-275_191-278+|IPR046357+15-159_165-284+|IPR051989+43-281+
|
— |
PF00254+66-155_187-275+FKBP-type_peptidyl-prolyl_cis-trans_isomerase
|
— |
PTHR46046+43-281+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-285
|
4nnr_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.716
|
31631.000
|
7.128
|
3.000
|
31.228
|
10.175
|
47.719
|
52.281
|
16.842
|
14.386
|
49.123
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
2450.218
|
1787.076
|
178.198
|
2229.126
|
6081.934
|
9428.876
|
1328.468
|
1635.162
|
20.732
|
2203.340
|
1267.937
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.554
|
0.182
|
3.753
|
1.416
|
0.649
|
-2.818
|
-2.639
|
— |
-6.856
|
6.922
|
— | — | — |