SCN Proteipedia

Hg_chrom4_TN10mRNA_8650

Organism: Heterodera glycines Gene Locus: chr4:10105208-10112410 Feature type: polypeptide

Protein Sequence

Length: 767

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.637	0.94	0.996	0.674	0.978	1.27	0.652	0.782	1.188	1.55	1.166	1.457	1.449	0.577	1.224	1.043	0.684	1.027	1.203	1.227	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_8120	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	3-Not_described	0.978

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	RKGDVGREMYIVKKGRL	—	—	—	—	—	—	0.000	—	—	0.090	0.080	0.008	0.146	0.322	0.309	0.195	0.006	0.646	0.019

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003933	1.000	2.000	Hsc_gene_22175.t1;Hsc_gene_22175.t2	Hsc_gene_16457.t1;Hsc_gene_22175.t1;Hsc_gene_22175.t2	—	Q03611.3 Cyclic nucleotide-gated cation channel [Caenorhabditis elegans]	WDE20389.1 tax-4, partial [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005216\|GO:0005249\|GO:0006811\|GO:0006813\|GO:0016020\|GO:0055085	GO:0005575_0.885\|GO:0110165_0.885\|GO:0008150_0.873\|GO:0016020_0.865\|GO:0009987_0.849\|GO:0051179_0.819\|GO:0006810_0.811\|GO:0051234_0.811\|GO:0003674_0.778\|GO:0005886_0.770\|GO:0071944_0.770\|GO:0055085_0.738\|GO:0006811_0.702\|GO:0034220_0.702\|GO:0005215_0.663\|GO:0022857_0.663\|GO:0005216_0.655\|GO:0015075_0.655\|GO:0015267_0.655\|GO:0022803_0.655\|GO:0006812_0.625\|GO:0098655_0.623\|GO:0022836_0.621\|GO:0005261_0.595\|GO:0008324_0.595\|GO:0043226_0.591\|GO:0015276_0.584\|GO:0022834_0.584\|GO:0099094_0.545\|GO:0043227_0.539\|GO:0043855_0.535\|GO:0098590_0.523\|GO:0032991_0.521\|GO:0005217_0.519\|GO:0005221_0.519\|GO:0005488_0.513	IPR000595+570-687_570-689_570-694_589-678+\|IPR003938+286-296_392-402_437-454_480-489_656-664+\|IPR005821+250-491+\|IPR014710+563-695+\|IPR018488+597-613_635-658+\|IPR018490+495-690+\|IPR032406+686-756+\|IPR050866+65-762+	SM00100+570-694+	PF00027+589-678+Cyclic_nucleotide-binding_domain\|PF00520+250-491+Ion_transport_protein\|PF16526+686-756+C-terminal_leucine_zipper_domain_of_cyclic_nucleotide-gated_channels	G3DSA:1.10.287.630:FF:000001+493-561+Cyclic_nucleotide-gated_channel_alpha_3\|G3DSA:2.60.120.10:FF:000002+563-697+Cyclic_nucleotide_gated_channel_alpha_1a	PTHR45638+65-762+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-112	1.000	113-767	6wek_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.760	88323.080	9.167	24.000	26.597	12.516	47.066	52.934	15.254	11.343	43.677

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	97.809	50.489	158.206	36.181	49.675	39.107	57.987	114.638	27.962	217.086	136.033

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.418	-0.618	-2.018	0.422	—	0.578	1.445	-0.841	—	—	—	—	—

No JSON data available for plots.

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