Hg_chrom4_TN10mRNA_8652
Organism: Heterodera glycines Gene Locus: chr4:10180771-10184698 Feature type: polypeptideProtein Sequence
Length: 672
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.709 | 2.007 | 0.352 | 0.667 | 0.57 | 2.9 | 0.673 | 1.786 | 1.091 | 0.885 | 0.293 | 1.663 | 1.157 | 1.86 | 0.911 | 1.446 | 0.732 | 0.924 | 0.572 | 0.438 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8122
|
— | — |
1.778
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
4.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.833
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
1-21
|
0.999
|
13-46
|
0.832
|
— | — |
0.000
|
— | — |
0.505
|
0.102
|
0.007
|
0.625
|
0.148
|
0.043
|
0.126
|
0.029
|
0.090
|
0.133
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001166
|
2.000
|
3.000
|
Hsc_gene_26517.t1;Hsc_gene_26517.t2;Hsc_gene_26517.t3
|
Hsc_gene_26517.t1
|
— |
P0CH02.1 Putative RING-H2 finger protein ATL21B [Arabidopsis thaliana]
|
XP_044756033.1 E3 ubiquitin-protein ligase Iruka [Coccinella septempunctata]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.917|GO:0003674_0.724|GO:0005575_0.703|GO:0110165_0.679|GO:0008152_0.668|GO:0044238_0.662|GO:0043170_0.656|GO:0005622_0.596|GO:0019538_0.568|GO:0003824_0.545|GO:0140096_0.545|GO:0016740_0.528|GO:0016746_0.528|GO:0016755_0.528|GO:0019787_0.528|GO:0016020_0.527|GO:0004842_0.525|GO:0009987_0.525|GO:0065007_0.516|GO:0043226_0.508|GO:0050896_0.506
|
IPR001841+626-668_627-667_627-668+|IPR013083+601-672+
|
SM00184+627-667+
|
PF13639+626-668+Ring_finger_domain
|
— |
PTHR45977+141-671+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
105-306;432-613
|
3.000
|
1-104;307-431;614-672
|
2ect_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.967
|
74127.260
|
8.446
|
19.000
|
15.327
|
9.970
|
49.851
|
50.149
|
9.970
|
5.357
|
54.613
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
482.200
|
19.541
|
70.172
|
30.923
|
19.143
|
47.196
|
13.106
|
33.154
|
4.146
|
2019.052
|
1155.521
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.611
|
0.524
|
-1.070
|
-0.720
|
1.313
|
-1.839
|
— |
-1.195
|
-9.108
|
— |
-6.256
|
— | — |
No JSON data available for plots.