Hg_chrom4_TN10mRNA_8654
Organism: Heterodera glycines Gene Locus: chr4:10193224-10195124 Feature type: polypeptideProtein Sequence
Length: 247
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.706 | 1.036 | 0.589 | 0.558 | 0.607 | 1.038 | 0.819 | 1.012 | 1.709 | 1.641 | 1.043 | 1.667 | 1.35 | 0.545 | 0.909 | 1.33 | 0.863 | 0.981 | 1.557 | 0.953 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8124
|
— | — |
1.556
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.966
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
lysosome_vacuole
|
— |
KKKK,KKLRP
|
— | — | — | — | — | — |
0.000
|
— | — |
0.154
|
0.157
|
0.033
|
0.145
|
0.469
|
0.490
|
0.207
|
0.008
|
0.449
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003934
|
1.000
|
2.000
|
Hsc_gene_22172.t1;Hsc_gene_22172.t2
|
— | — | — |
XP_064121995.1 metal cation symporter ZIP14-like [Macrobrachium nipponense];XP_064121996.1 metal cation symporter ZIP14-like [Macrobrachium nipponense];XP_064121997.1 metal cation symporter ZIP14-like [Macrobrachium nipponense]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-247
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.817
|
27717.410
|
10.023
|
13.500
|
20.243
|
12.146
|
43.320
|
56.680
|
13.360
|
6.883
|
46.154
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
salmon
|
173.235
|
26.448
|
63.876
|
75.558
|
82.120
|
57.769
|
164.737
|
69.532
|
2.764
|
553.316
|
317.365
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.038
|
1.377
|
— | — |
-0.493
|
1.522
|
— |
1.386
|
-7.827
|
5.074
|
— | — |
7.176
|
No JSON data available for plots.