Hg_chrom4_TN10mRNA_8656
Organism: Heterodera glycines Gene Locus: chr4:10214849-10221696 Feature type: polypeptideProtein Sequence
Length: 582
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.839 | 0.839 | 0.875 | 0.296 | 0.974 | 1.718 | 1.248 | 1.632 | 0.496 | 0.929 | 1.198 | 1.213 | 0.525 | 0.76 | 1.788 | 1.718 | 0.93 | 0.651 | 0.132 | 0.404 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8126
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKR,LRERVNKKK,RRSSSAGRSRSAGSRRRSR,KKSKKAVLKRLKKGKKDKD,KKAVLKRLKKGKKDKDRHR
|
14-34
|
0.963
|
— | — | — | — |
0.000
|
— | — |
0.923
|
0.029
|
0.006
|
0.276
|
0.037
|
0.012
|
0.040
|
0.007
|
0.132
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003935
|
1.000
|
2.000
|
Hsc_gene_22168.t1;Hsc_gene_22168.t2
|
Hsc_gene_22168.t1;Hsc_gene_22168.t2
|
— | — |
KAI1724256.1 RNA recognition motif domain-containing protein [Ditylenchus destructor]
|
No
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0045892
|
— |
IPR028851+495-578+
|
— | — | — |
PTHR15836+495-578+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-518
|
1.000
|
519-582
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.893
|
63298.390
|
10.748
|
44.500
|
30.584
|
6.701
|
58.591
|
41.409
|
19.931
|
10.653
|
52.921
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1470.705
|
167.161
|
988.350
|
672.706
|
158.228
|
63.511
|
102.734
|
78.003
|
5651.588
|
1359.132
|
3198.756
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.335
|
1.872
|
-0.447
|
-2.118
|
-1.303
|
0.706
|
— |
0.540
|
— |
-2.885
|
-2.854
|
— | — |
No JSON data available for plots.