Hg_chrom4_TN10mRNA_8657
Organism: Heterodera glycines Gene Locus: chr4:10229458-10230906 Feature type: polypeptideProtein Sequence
Length: 229
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.406 | 1.219 | 0.556 | 1.355 | 1.092 | 1.232 | 0.832 | 2.402 | 1.456 | 1.416 | 1.257 | 1.027 | 1.82 | 0.756 | 1.337 | 1.123 | 0.644 | 0.529 | 0.672 | 0.257 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8127
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.744
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
KRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.749
|
0.311
|
0.058
|
0.469
|
0.054
|
0.082
|
0.083
|
0.065
|
0.025
|
0.095
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001281
|
3.000
|
2.000
|
Hsc_gene_22165.t1;Hsc_gene_3638.t1
|
Hsc_gene_22165.t1;Hsc_gene_3638.t1
|
— | — |
KHN72886.1 putative tRNA (uracil-O(2)-)-methyltransferase [Toxocara canis]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008168|GO:0046872
|
— |
IPR000571+201-229+|IPR011671+18-228+
|
— | — | — |
PTHR21210+18-228+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-229
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.792
|
26224.310
|
9.803
|
17.500
|
29.258
|
13.100
|
51.092
|
48.908
|
19.651
|
9.607
|
41.921
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
336.164
|
89.829
|
102.441
|
115.609
|
93.318
|
73.717
|
107.932
|
151.566
|
12.676
|
1185.809
|
683.037
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.284
|
-0.343
|
— |
0.561
|
0.934
|
-0.347
|
-6.714
|
— |
-3.401
|
— | — |
No JSON data available for plots.