Hg_chrom4_TN10mRNA_8661
Organism: Heterodera glycines Gene Locus: chr4:10271031-10271837 Feature type: polypeptideProtein Sequence
Length: 126
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.461 | 1.292 | 0.866 | 0.547 | 0.661 | 0.814 | 0.661 | 1.587 | 1.587 | 0.429 | 1.203 | 0.934 | 2.425 | 0.611 | 2.268 | 0.68 | 0.911 | 1.082 | 3.053 | 1.167 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8131
|
— | — |
1.778
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
RRRK
|
1-21
|
0.969
|
— | — | — | — |
0.009
|
— | — |
0.633
|
0.349
|
0.023
|
0.354
|
0.143
|
0.106
|
0.146
|
0.272
|
0.088
|
0.531
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000762
|
5.000
|
1.000
|
Hsc_gene_4704.t2
|
Hsc_gene_22209.t1;Hsc_gene_22209.t2;Hsc_gene_22209.t3;Hsc_gene_24607.t1;Hsc_gene_24607.t2;Hsc_gene_4704.t1;Hsc_gene_4704.t2
|
— | — |
KAH7705624.1 pogo transposable element with KRAB domain-like protein [Aphelenchus avenae]
|
No
|
0.300
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-126
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.717
|
15253.550
|
10.871
|
15.000
|
30.952
|
19.841
|
50.000
|
50.000
|
22.222
|
8.730
|
42.063
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
3.668
|
0.149
|
5.273
|
7.688
|
1.685
|
0.758
|
0.000
|
1.096
|
10.863
|
1.656
|
5.602
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.872
|
5.518
|
— |
-2.202
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.