Hg_chrom4_TN10mRNA_8662
Organism: Heterodera glycines Gene Locus: chr4:10284778-10289509 Feature type: polypeptideProtein Sequence
Length: 724
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.723 | 1.188 | 0.728 | 1.191 | 0.829 | 1.133 | 0.806 | 2.348 | 1.289 | 1.251 | 1.067 | 1.137 | 1.688 | 1.116 | 1.297 | 1.046 | 0.679 | 0.544 | 1.487 | 0.325 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8132
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.967
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
KRRK,KRRP,RKKLILTGAPKRPRQ
|
28-68
|
0.873
|
66-104
|
0.981
|
— | — |
0.000
|
— | — |
0.609
|
0.379
|
0.030
|
0.577
|
0.111
|
0.046
|
0.121
|
0.078
|
0.077
|
0.089
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001281
|
3.000
|
2.000
|
Hsc_gene_22165.t1;Hsc_gene_3638.t1
|
Hsc_gene_22165.t1;Hsc_gene_3638.t1
|
— |
Q60K16.1 Probable tRNA (uracil-O(2)-)-methyltransferase [Caenorhabditis briggsae]
|
KAK6100619.1 putative AdoMet-dependent methyltransferase family protein [Brugia pahangi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008168|GO:0046872
|
GO:0005575_0.897|GO:0110165_0.897|GO:0005622_0.843|GO:0005737_0.751|GO:0005829_0.596|GO:0008150_0.579|GO:0016020_0.561|GO:0043226_0.547|GO:0043229_0.534|GO:0003674_0.524|GO:0009987_0.518|GO:0043227_0.509
|
IPR000571+696-724+|IPR011671+286-723_340-433+
|
— |
PF07757+340-433+Predicted_AdoMet-dependent_methyltransferase
|
— |
PTHR21210+286-723+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-724
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.853
|
82146.510
|
9.789
|
49.000
|
27.072
|
13.812
|
48.066
|
51.934
|
18.094
|
8.978
|
46.409
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
471.689
|
604.950
|
451.361
|
522.032
|
450.642
|
374.332
|
438.274
|
501.425
|
264.324
|
611.767
|
462.863
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.653
|
-0.350
|
0.319
|
-0.243
|
-0.252
|
— |
0.315
|
— | — | — | — | — | — |
No JSON data available for plots.