Hg_chrom4_TN10mRNA_8664
Organism: Heterodera glycines Gene Locus: chr4:10295259-10297966 Feature type: polypeptideProtein Sequence
Length: 523
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.912 | 1.201 | 0.73 | 0.066 | 2.326 | 1.275 | 0.774 | 0.574 | 0.722 | 0.982 | 1.796 | 1.8 | 0.478 | 0.919 | 0.78 | 0.929 | 0.815 | 0.985 | 1.03 | 0.337 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8134
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
12H04|AF490244.1#tn8jg5239.t1
|
12H04|AF4902441#tn8jg5239t1
|
— | — | — |
17-Not_Clustered
|
0.776
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
nucleus
|
nucleus
|
RKFISNVFGRKKRDT,RKDKLIEWAGGEEAKKLKE,KKRDTEAVHRENMTGERRK,KRDTEAVHRENMTGERRKI
|
— | — | — | — |
1-18
|
0.946
|
0.996
|
0.000
|
0.000
|
0.433
|
0.178
|
0.024
|
0.417
|
0.142
|
0.068
|
0.144
|
0.090
|
0.129
|
0.385
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008996
|
1.000
|
1.000
|
Hsc_gene_1010.t1
|
— | — | — |
AAO85452.1 putative gland protein G12H04 [Heterodera glycines]
|
OKY78695
|
0.300
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-438
|
1.000
|
439-523
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.564
|
58440.840
|
5.207
|
-9.000
|
34.799
|
5.354
|
56.405
|
43.595
|
16.826
|
17.973
|
46.463
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
5413.963
|
442.344
|
1880.671
|
1147.463
|
477.295
|
770.633
|
131.130
|
746.129
|
24877.148
|
2929.851
|
12335.836
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.860
|
1.238
|
-0.605
|
-1.298
|
0.707
|
-2.545
|
— |
-2.366
|
2.978
|
-4.269
|
— | — | — |