Hg_chrom4_TN10mRNA_8667
Organism: Heterodera glycines Gene Locus: chr4:10333915-10356241 Feature type: polypeptideProtein Sequence
Length: 1,875
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.036 | 0.794 | 0.844 | 0.68 | 0.809 | 1.34 | 0.838 | 1.573 | 1.043 | 1.153 | 0.469 | 1.506 | 0.993 | 1.221 | 1.284 | 1.31 | 1.04 | 0.962 | 1.354 | 0.612 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8137
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
PKPS
|
— | — | — | — | — | — |
0.001
|
— | — |
0.213
|
0.200
|
0.027
|
0.522
|
0.137
|
0.581
|
0.333
|
0.099
|
0.218
|
0.104
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003937
|
2.000
|
1.000
|
Hsc_gene_1012.t1
|
Hsc_gene_1012.t1
|
— |
Q8N122.1 Regulatory-associated protein of mTOR [Homo sapiens]
|
KAH7727909.1 regulatory-associated protein of mTOR [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0031929|GO:0031931
|
GO:0008150_0.972|GO:0005575_0.857|GO:0110165_0.849|GO:0065007_0.811|GO:0050789_0.786|GO:0009987_0.747|GO:0005622_0.716|GO:0050794_0.671|GO:0016020_0.614|GO:0050896_0.550|GO:0005737_0.541|GO:0003674_0.516|GO:0051716_0.513|GO:0048518_0.509|GO:0043226_0.502
|
IPR004083+10-1831+|IPR011989+516-757+|IPR015943+1381-1778+|IPR016024+483-757+|IPR029347+44-201_45-200+|IPR036322+1363-1716+
|
SM01302+44-201+
|
PF14538+45-200+Raptor_N-terminal_CASPase_like_domain
|
— |
PTHR12848+10-1831+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-25;807-898;1018-1256;1755-1827;1875-1875
|
4.000
|
26-806;899-1017;1257-1754;1828-1874
|
7pec_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.800
|
205905.510
|
7.471
|
27.500
|
22.027
|
10.560
|
46.187
|
53.813
|
12.533
|
9.493
|
54.187
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1368.384
|
1650.930
|
655.956
|
759.293
|
817.128
|
694.471
|
1299.842
|
343.298
|
353.644
|
3388.605
|
2087.907
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.561
|
-1.258
|
0.319
|
— | — |
0.915
|
-1.122
|
2.063
|
-3.368
|
— | — | — | — |
No JSON data available for plots.