Hg_chrom4_TN10mRNA_8668
Organism: Heterodera glycines Gene Locus: chr4:10357487-10364846 Feature type: polypeptideProtein Sequence
Length: 416
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.95 | 0.783 | 0.874 | 0.58 | 1.002 | 0.678 | 1.145 | 1.442 | 0.962 | 1.267 | 0.692 | 1.555 | 1.002 | 0.832 | 2.011 | 0.687 | 1.025 | 1.275 | 1.109 | 0.354 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8138
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— |
PDRKRRI,RGPPRKWR,KRRPNYTNKSRKRF.
|
— | — |
8-47
|
0.881
|
— | — |
0.000
|
— | — |
0.254
|
0.859
|
0.228
|
0.298
|
0.140
|
0.029
|
0.046
|
0.037
|
0.038
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008997
|
1.000
|
1.000
|
Hsc_gene_1013.t1
|
— | — |
Q09523.1 GTPase Era, mitochondrial [Caenorhabditis elegans]
|
KAH7727908.1 putative GTP-binding protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0005525
|
GO:0008150_0.782|GO:0009987_0.718|GO:0005575_0.643|GO:0110165_0.642|GO:0005622_0.549|GO:0003674_0.546|GO:0016020_0.504
|
IPR005662+3-317+|IPR006073+7-130_8-28_57-72+|IPR009019+230-321+|IPR015946+232-332+|IPR027417+3-221_6-217+
|
— |
PF01926+7-130+50S_ribosome-binding_GTPase
|
— |
PTHR42698+3-317+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
333-416
|
1.000
|
1-332
|
1x18_X
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.823
|
46082.030
|
10.231
|
21.000
|
28.125
|
9.135
|
45.192
|
54.808
|
17.308
|
10.817
|
51.442
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
greenyellow
|
852.112
|
1178.593
|
953.287
|
1006.329
|
1039.771
|
724.225
|
868.759
|
561.597
|
441.921
|
1021.837
|
773.302
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.536
|
-0.365
|
0.187
|
— |
-0.507
|
0.273
|
-0.470
|
0.771
|
— | — | — | — | — |
No JSON data available for plots.