Hg_chrom4_TN10mRNA_8670
Organism: Heterodera glycines Gene Locus: chr4:10368238-10377926 Feature type: polypeptideProtein Sequence
Length: 689
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.945 | 0.945 | 0.95 | 1.051 | 0.822 | 1.303 | 0.449 | 1.669 | 1.193 | 1.51 | 0.616 | 1.366 | 1.169 | 1.089 | 1.244 | 0.974 | 0.738 | 0.968 | 2.121 | 0.896 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8140
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|lysosome_vacuole
|
— |
PKPS
|
— | — | — | — | — | — |
0.001
|
— | — |
0.247
|
0.174
|
0.018
|
0.559
|
0.202
|
0.604
|
0.448
|
0.044
|
0.258
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003937
|
2.000
|
1.000
|
Hsc_gene_1012.t1
|
Hsc_gene_1012.t1
|
— |
Q8K4Q0.1 Regulatory-associated protein of mTOR [Mus musculus]
|
KAH7727909.1 regulatory-associated protein of mTOR [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0031929|GO:0031931
|
GO:0008150_0.963|GO:0005575_0.839|GO:0110165_0.839|GO:0065007_0.776|GO:0050789_0.767|GO:0009987_0.729|GO:0005622_0.720|GO:0050794_0.646|GO:0016020_0.627|GO:0005737_0.579|GO:0050896_0.534|GO:0043226_0.519|GO:0043229_0.505|GO:0051716_0.505
|
IPR004083+10-683+|IPR011989+516-681+|IPR016024+483-664+|IPR029347+44-201_45-200+
|
SM01302+44-201+
|
PF14538+45-200+Raptor_N-terminal_CASPase_like_domain
|
— |
PTHR12848+10-683+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-25
|
1.000
|
26-689
|
5wbl_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.631
|
78771.730
|
7.460
|
11.500
|
23.657
|
13.353
|
44.122
|
55.878
|
13.498
|
10.160
|
47.605
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
215.254
|
43.825
|
18.099
|
17.997
|
23.431
|
17.594
|
30.818
|
6.593
|
58.269
|
838.650
|
504.201
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.511
|
-1.421
|
— | — | — |
0.821
|
-1.525
|
2.368
|
— | — |
-4.541
|
— | — |
No JSON data available for plots.