Hg_chrom4_TN10mRNA_8677
Organism: Heterodera glycines Gene Locus: chr4:10574822-10577240 Feature type: polypeptideProtein Sequence
Length: 164
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.355 | 0.993 | 1.441 | 0.421 | 1.22 | 1.563 | 0.726 | 2.134 | 0.678 | 1.401 | 0.831 | 2.152 | 2.033 | 0.704 | 1.244 | 0.436 | 0.9 | 0.924 | 0.938 | 1.255 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8147
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
— | — | — | — | — | — |
1-22
|
0.901
|
1.000
|
0.000
|
0.000
|
0.322
|
0.232
|
0.026
|
0.482
|
0.089
|
0.395
|
0.128
|
0.007
|
0.431
|
0.305
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009000
|
1.000
|
1.000
|
Hsc_gene_16473.t1
|
— | — |
P13395.2 Spectrin alpha chain [Drosophila melanogaster]
|
OUC42385.1 EF hand, partial [Trichinella nativa]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.823|GO:0110165_0.820|GO:0008150_0.817|GO:0005622_0.773|GO:0003674_0.745|GO:0009987_0.720|GO:0005737_0.710|GO:0043226_0.697|GO:0043229_0.679|GO:0005488_0.662|GO:0016020_0.646|GO:0005515_0.603|GO:0071944_0.567|GO:0043228_0.542|GO:0043232_0.542|GO:0005886_0.531
|
IPR002048+80-115+|IPR011992+38-144+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
142-164
|
1.000
|
1-141
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.739
|
19428.010
|
5.866
|
-2.500
|
31.098
|
17.073
|
50.000
|
50.000
|
15.854
|
15.244
|
40.854
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
200.586
|
38.295
|
40.154
|
44.299
|
77.757
|
185.656
|
134.104
|
645.518
|
51.195
|
401.999
|
251.654
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.780
|
1.269
|
-0.459
|
1.697
|
-2.125
|
— | — | — | — | — |