Hg_chrom4_TN10mRNA_8682
Organism: Heterodera glycines Gene Locus: chr4:10684663-10686109 Feature type: polypeptideProtein Sequence
Length: 243
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.675 | 0.67 | 1.048 | 0.142 | 0.96 | 0.739 | 0.784 | 1.029 | 0.64 | 0.667 | 2.245 | 2.663 | 0.229 | 1.345 | 0.336 | 1.058 | 0.742 | 1.06 | 0.0 | 1.089 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8152
|
— | — |
1.778
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
20G04|AF500022.1#tn20jg17802.t1
|
10A07|AF5000211#TN10pacbiomikadoChromosome_4G3991
|
Hsc_gene_25898;Hsc_gene_22900;Hsc_gene_22902;Hsc_gene_23186;Hsc_gene_8453;Hsc_gene_7903;Hsc_gene_7904;Hsc_gene_23890
|
— | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
KKDNKKGAVAASPAKGKASPKGGKSPAKGKAAKKLKPKKDAKGIKAKKAKPAKKSKAAKAVKGAPKTVKKLAIAK
|
— | — | — | — |
1-23
|
0.987
|
1.000
|
0.000
|
0.000
|
0.616
|
0.038
|
0.019
|
0.510
|
0.069
|
0.083
|
0.230
|
0.004
|
0.159
|
0.101
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001050
|
4.000
|
1.000
|
Hsc_gene_8453.t1
|
Hsc_gene_8453.t1
|
— | — |
QLK97571.1 secretory protein 10A07 [Heterodera glycines]
|
No
|
0.320
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-243
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.803
|
25932.850
|
10.071
|
14.500
|
30.041
|
6.584
|
47.737
|
52.263
|
18.519
|
11.523
|
55.967
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
890.716
|
2.611
|
2.987
|
867.548
|
972.270
|
80.486
|
110.799
|
72.016
|
1413.400
|
2046.064
|
1774.922
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
8.245
|
8.288
|
— |
-3.580
|
0.473
|
— | — | — | — | — | — | — |