Hg_chrom4_TN10mRNA_8684
Organism: Heterodera glycines Gene Locus: chr4:10707427-10715461 Feature type: polypeptideProtein Sequence
Length: 486
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.053 | 0.861 | 1.347 | 0.639 | 1.097 | 1.002 | 1.078 | 0.926 | 0.686 | 1.112 | 1.247 | 1.573 | 1.086 | 0.831 | 0.882 | 0.764 | 0.675 | 1.216 | 1.583 | 0.666 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8154
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
— |
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_7901
|
— |
5-pJ2_J3_J4
|
0.970
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
endoplasmic_reticulum
|
nucleus
|
KKGVDEEEKKKKGTK,EKKKKGTKTEEEVSAKKTKMPKKK
|
— | — | — | — |
1-24
|
0.935
|
0.999
|
0.000
|
0.000
|
0.272
|
0.148
|
0.075
|
0.288
|
0.902
|
0.165
|
0.189
|
0.090
|
0.270
|
0.316
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000864
|
1.000
|
5.000
|
Hsc_gene_2196.t1;Hsc_gene_2196.t2;Hsc_gene_2196.t3;Hsc_gene_2197.t1;Hsc_gene_7901.t1
|
Hsc_gene_7901.t1
|
— |
Q11067.1 Protein disulfide-isomerase A6 homolog [Caenorhabditis elegans]
|
AVA09675.1 putative effector protein [Heterodera avenae]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003756
|
GO:0005575_0.903|GO:0110165_0.900|GO:0008150_0.817|GO:0005622_0.805|GO:0016020_0.762|GO:0009987_0.757|GO:0071944_0.696|GO:0005737_0.692|GO:0043226_0.691|GO:0043229_0.683|GO:0005886_0.665|GO:0043227_0.655|GO:0043231_0.635|GO:0005773_0.532|GO:0012505_0.524|GO:0003674_0.513
|
IPR005788+168-271+|IPR013766+10-138_32-131_155-273_165-268+|IPR017937+52-70_185-203+|IPR036249+25-133_162-271_284-397+
|
— |
PF00085+32-131_165-268+Thioredoxin
|
— |
PTHR45815+12-440+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
388-486
|
1.000
|
1-387
|
8cpq_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.607
|
53562.880
|
6.083
|
-2.500
|
28.395
|
10.082
|
45.473
|
54.527
|
14.403
|
13.992
|
52.881
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
4977.905
|
3199.174
|
3080.764
|
4731.436
|
5132.361
|
5247.794
|
3092.049
|
3831.232
|
11990.666
|
2167.283
|
6377.305
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.283
|
0.428
|
0.728
|
0.085
|
— |
-0.754
|
-0.556
|
— |
2.345
|
— | — | — | — |