Hg_chrom4_TN10mRNA_8685
Organism: Heterodera glycines Gene Locus: chr4:10737098-10739864 Feature type: polypeptideProtein Sequence
Length: 325
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.716 | 1.431 | 1.119 | 0.531 | 1.179 | 1.183 | 0.952 | 1.692 | 1.709 | 0.624 | 1.352 | 0.905 | 1.026 | 0.71 | 1.319 | 0.835 | 0.958 | 0.793 | 0.947 | 0.633 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8155
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.620
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRHR,KKLDISFVSGTEERIKRKA,KRAKNTAKQQRKRANKRTKPK
|
31-51
|
0.932
|
— | — | — | — |
0.000
|
— | — |
0.916
|
0.044
|
0.021
|
0.245
|
0.015
|
0.021
|
0.025
|
0.013
|
0.037
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003434
|
2.000
|
1.000
|
Hsc_gene_11159.t1
|
— | — |
P02309.2 Histone H4 [Saccharomyces cerevisiae S288C]
|
XP_037450580.1 histone H4-like [Triticum dicoccoides]
|
No
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000786|GO:0003677|GO:0030527|GO:0046982
|
GO:0005575_0.812|GO:0110165_0.804|GO:0005622_0.735|GO:0043226_0.690|GO:0016020_0.671|GO:0043229_0.670|GO:0043227_0.642|GO:0043231_0.629|GO:0005634_0.562|GO:0008150_0.518
|
IPR001951+5-16_20-39_40-60+|IPR009072+2-61_5-65+|IPR019809+15-19+
|
— | — | — |
PTHR10484+1-56+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-193
|
1.000
|
194-325
|
7on1_f
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.849
|
36681.320
|
9.273
|
12.500
|
32.000
|
10.462
|
54.462
|
45.538
|
18.769
|
13.231
|
48.615
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
red
|
117.408
|
12.113
|
86.950
|
59.847
|
71.239
|
154.615
|
68.149
|
217.203
|
20.378
|
247.084
|
149.924
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.617
|
2.169
|
-0.431
|
— |
1.132
|
-1.172
|
— |
-1.530
|
-3.722
|
— | — | — | — |
No JSON data available for plots.