Hg_chrom4_TN10mRNA_8686
Organism: Heterodera glycines Gene Locus: chr4:10747041-10748554 Feature type: polypeptideProtein Sequence
Length: 409
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.711 | 1.194 | 0.845 | 1.18 | 1.141 | 1.128 | 0.699 | 1.345 | 1.467 | 1.355 | 0.926 | 1.294 | 1.698 | 0.47 | 1.048 | 1.222 | 0.762 | 0.778 | 1.128 | 0.719 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8156
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.666
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus|extracellular
|
— | — |
25-48
|
0.994
|
— | — | — | — |
0.000
|
— | — |
0.669
|
0.311
|
0.021
|
0.411
|
0.288
|
0.086
|
0.151
|
0.230
|
0.063
|
0.637
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003941
|
2.000
|
1.000
|
Hsc_gene_14878.t1
|
Hsc_gene_14605.t1;Hsc_gene_16017.t1;Hsc_gene_21963.t1;Hsc_gene_21964.t1;Hsc_gene_21966.t1;Hsc_gene_26695.t1
|
— | — |
XP_054866353.1 zinc finger BED domain-containing protein 5-like [Amphiprion ocellaris]
|
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR012337+68-329+
|
— | — | — |
PTHR37162+3-358+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-409
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.673
|
46431.180
|
7.172
|
4.500
|
25.428
|
12.714
|
48.166
|
51.834
|
13.936
|
11.491
|
45.966
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
blue
|
22.800
|
0.608
|
3.467
|
9.192
|
5.732
|
1.773
|
0.410
|
19.704
|
2.764
|
82.345
|
48.239
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.282
|
3.775
|
1.516
|
— |
-1.680
|
— |
3.374
|
-5.453
|
-5.024
|
— | — | — | — |
No JSON data available for plots.