Hg_chrom4_TN10mRNA_8687
Organism: Heterodera glycines Gene Locus: chr4:10753419-10754836 Feature type: polypeptideProtein Sequence
Length: 282
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.619 | 1.155 | 0.774 | 0.489 | 0.887 | 1.364 | 0.507 | 1.064 | 1.418 | 1.342 | 1.504 | 1.252 | 2.069 | 0.955 | 0.796 | 0.811 | 0.988 | 0.86 | 1.091 | 1.043 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8157
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKKK
|
11-40
|
0.987
|
— | — | — | — |
0.000
|
— | — |
0.625
|
0.180
|
0.008
|
0.468
|
0.119
|
0.022
|
0.066
|
0.003
|
0.102
|
0.119
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003942
|
1.000
|
2.000
|
Hsc_gene_22225.t1;Hsc_gene_26610.t1
|
— | — | — |
KAI3417697.1 hypothetical protein GPALN_012172 [Globodera pallida]
|
WP_308039654
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.936|GO:0005575_0.910|GO:0110165_0.906|GO:0009987_0.882|GO:0005622_0.859|GO:0003674_0.855|GO:0043226_0.825|GO:0043229_0.811|GO:0071840_0.737|GO:0003824_0.734|GO:0016043_0.733|GO:0016020_0.689|GO:0006325_0.674|GO:0006338_0.674|GO:0140096_0.671|GO:0032451_0.650|GO:0032452_0.650|GO:0032454_0.650|GO:0140457_0.650|GO:0140993_0.650|GO:0141052_0.650|GO:0043227_0.622|GO:0043231_0.606|GO:0065007_0.568|GO:0008152_0.554|GO:0050789_0.550|GO:0044237_0.538|GO:0050794_0.538|GO:0009058_0.525|GO:0044249_0.504|GO:0043170_0.502
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-9
|
1.000
|
10-282
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.727
|
32665.970
|
9.911
|
15.000
|
25.532
|
14.539
|
47.518
|
52.482
|
15.957
|
9.574
|
42.553
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
38.752
|
0.000
|
0.425
|
12.006
|
2.226
|
0.000
|
0.201
|
0.559
|
0.000
|
163.760
|
93.577
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
8.017
|
4.899
|
-2.443
|
-4.998
|
— | — | — |
-8.152
|
4.443
|
— | — | — |
No JSON data available for plots.