Hg_chrom4_TN10mRNA_8689
Organism: Heterodera glycines Gene Locus: chr4:10770214-10776332 Feature type: polypeptideProtein Sequence
Length: 376
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.68 | 1.361 | 0.387 | 1.009 | 0.399 | 0.682 | 0.697 | 1.064 | 1.478 | 1.509 | 0.161 | 2.66 | 2.29 | 0.921 | 1.411 | 1.254 | 0.523 | 1.33 | 2.046 | 1.017 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8159
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RPRR
|
29-55
|
0.994
|
— | — | — | — |
0.000
|
— | — |
0.106
|
0.144
|
0.010
|
0.126
|
0.221
|
0.304
|
0.174
|
0.010
|
0.861
|
0.087
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009002
|
1.000
|
1.000
|
Hsc_gene_25648.t1
|
Hsc_gene_25648.t1
|
— |
P34311.3 Probable G-protein coupled receptor C06G4.5 [Caenorhabditis elegans]
|
KAF7627324.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.938|GO:0009987_0.879|GO:0065007_0.827|GO:0005575_0.802|GO:0050789_0.802|GO:0110165_0.800|GO:0003674_0.795|GO:0050794_0.776|GO:0050896_0.763|GO:0007154_0.744|GO:0023052_0.741|GO:0051716_0.738|GO:0007165_0.696|GO:0007186_0.671|GO:0016020_0.661|GO:0071944_0.643|GO:0005886_0.635|GO:0004888_0.574|GO:0005488_0.574|GO:0038023_0.574|GO:0060089_0.574|GO:0004930_0.502
|
IPR000276+10-34_51-315_52-73_96-118_102-118_198-221_249-273_297-323+|IPR017452+25-315+
|
— |
PF00001+51-315+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24229+4-347+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
330-376
|
1.000
|
1-329
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.895
|
42980.620
|
9.388
|
17.000
|
14.628
|
16.489
|
35.106
|
64.894
|
10.106
|
4.521
|
48.138
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
787.106
|
16.328
|
86.867
|
29.462
|
13.289
|
10.365
|
68.343
|
63.487
|
57.965
|
3292.064
|
1906.022
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.182
|
0.715
|
-1.450
|
-1.184
|
— |
2.729
|
2.506
|
— |
-5.927
|
— |
-7.393
|
— | — |
No JSON data available for plots.