Hg_chrom4_TN10mRNA_8694
Organism: Heterodera glycines Gene Locus: chr4:10801184-10802112 Feature type: polypeptideProtein Sequence
Length: 249
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.42 | 1.681 | 0.803 | 0.138 | 1.606 | 1.648 | 0.478 | 0.402 | 1.874 | 0.814 | 2.738 | 0.945 | 1.673 | 0.309 | 1.229 | 0.459 | 0.461 | 0.548 | 1.545 | 1.181 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8164
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
RKFDAIKYKLKQKGK,KKLGINTTTLRKWKKE,KREIIRKFDAIKYKLKQK,KKLRIRIATLRTWRKKFD,RKIGKLLGANREKIYKWKK,KKQLNLNKMHFYDEKKREF,KIKERNAKISDVKIAKKLRIR
|
— | — | — | — |
1-19
|
0.974
|
0.943
|
0.000
|
0.000
|
0.655
|
0.191
|
0.040
|
0.495
|
0.089
|
0.034
|
0.049
|
0.044
|
0.171
|
0.126
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000042
|
25.000
|
0.000
|
0.000
|
— | — | — |
KAI3410399.1 hypothetical protein GPALN_004500 [Globodera pallida]
|
OEU83692
|
0.450
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-249
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.788
|
30239.020
|
10.524
|
26.000
|
38.956
|
12.851
|
58.635
|
41.365
|
24.900
|
14.056
|
30.924
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
193.639
|
0.307
|
15.997
|
58.968
|
14.794
|
1.743
|
0.611
|
0.280
|
676.357
|
305.141
|
464.233
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.481
|
7.453
|
1.988
|
-2.024
|
-3.067
|
— | — | — | — | — | — | — | — |