Hg_chrom4_TN10mRNA_8696
Organism: Heterodera glycines Gene Locus: chr4:10812783-10829120 Feature type: polypeptideProtein Sequence
Length: 1,083
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.084 | 1.203 | 0.554 | 0.987 | 0.8 | 1.492 | 0.747 | 2.308 | 1.067 | 1.011 | 0.7 | 0.978 | 0.949 | 1.385 | 1.244 | 1.293 | 1.166 | 0.63 | 0.71 | 0.462 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8166
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
chloroplast
|
KKQTDQLHPVATGLKRPRQ
|
30-66
|
0.904
|
39-76
|
0.979
|
1-24
|
0.660
|
0.523
|
0.000
|
0.000
|
0.780
|
0.222
|
0.028
|
0.405
|
0.071
|
0.034
|
0.099
|
0.031
|
0.128
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003944
|
1.000
|
2.000
|
Hsc_gene_1827.t1;Hsc_gene_1827.t2
|
Hsc_gene_1827.t2;Hsc_gene_1828.t1
|
— |
Q9U2R6.2 Nuclear hormone receptor family member nhr-91 [Caenorhabditis elegans]
|
KAI1724298.1 zinc finger, c4 type (two domains) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003700|GO:0006355|GO:0008270|GO:0043565
|
GO:0003674_0.874|GO:0005575_0.864|GO:0005488_0.856|GO:0008150_0.841|GO:0110165_0.837|GO:0009987_0.808|GO:0065007_0.786|GO:0050789_0.778|GO:0050794_0.774|GO:0005622_0.769|GO:0043226_0.718|GO:0097159_0.710|GO:0043229_0.696|GO:0003676_0.695|GO:0008152_0.669|GO:0019222_0.669|GO:0031323_0.669|GO:0044237_0.669|GO:0043170_0.666|GO:0003677_0.661|GO:0043565_0.661|GO:0044238_0.655|GO:0080090_0.655|GO:0060255_0.650|GO:0009058_0.642|GO:0009059_0.642|GO:0044249_0.642|GO:0010467_0.638|GO:0009889_0.635|GO:0010556_0.635|GO:0031326_0.635|GO:0010468_0.630|GO:0006139_0.622|GO:0016020_0.622|GO:0034654_0.622|GO:0090304_0.622|GO:0141187_0.622|GO:0016070_0.621|GO:0032774_0.621|GO:0019219_0.608|GO:0051252_0.603|GO:0050896_0.600|GO:0003690_0.599|GO:1990837_0.599|GO:0006351_0.595|GO:2001141_0.593|GO:0006355_0.588|GO:0048518_0.571|GO:0006366_0.567|GO:0032502_0.559|GO:0048856_0.558|GO:0032501_0.546|GO:0006357_0.544|GO:0051716_0.540|GO:0000976_0.534|GO:0001067_0.534|GO:0043227_0.528|GO:0007275_0.518|GO:0043231_0.513
|
IPR000536+754-1045_794-1016_796-1016+|IPR001628+512-610_512-614_514-554_515-531_515-541_531-546_578-608_591-599_599-607+|IPR001723+603-613_797-818_818-834_908-923+|IPR013088+505-640+|IPR035500+762-1025_780-1040+|IPR050200+293-555+
|
SM00399+512-610+|SM00430+796-1016+
|
PF00104+794-1016+Ligand-binding_domain_of_nuclear_hormone_receptor|PF00105+514-554_578-608+Zinc_finger,_C4_type_(two_domains)
|
— |
PTHR48092+293-555+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
225-469;613-767;1062-1083
|
3.000
|
1-224;470-612;768-1061
|
5krb_G
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.940
|
118670.070
|
9.266
|
56.000
|
23.176
|
10.526
|
50.323
|
49.677
|
15.328
|
7.849
|
54.201
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
1404.025
|
619.617
|
573.469
|
544.836
|
1534.688
|
4762.058
|
691.606
|
485.920
|
126.125
|
2593.443
|
1536.021
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.341
|
-0.322
|
— |
1.461
|
1.649
|
-2.774
|
-3.400
|
0.653
|
-4.484
|
— | — | — | — |