Hg_chrom4_TN10mRNA_8698
Organism: Heterodera glycines Gene Locus: chr4:10839774-10857045 Feature type: polypeptideProtein Sequence
Length: 807
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.865 | 1.124 | 0.856 | 1.367 | 0.971 | 0.89 | 0.62 | 1.425 | 1.157 | 1.038 | 0.807 | 1.385 | 1.136 | 0.977 | 1.416 | 1.31 | 0.833 | 0.826 | 0.858 | 1.239 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8168
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RRSKTLSQRLKKAAKQRLRK
|
28-61
|
0.921
|
31-59
|
0.981
|
— | — |
0.000
|
— | — |
0.097
|
0.058
|
0.037
|
0.146
|
0.246
|
0.255
|
0.273
|
0.012
|
0.847
|
0.086
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009005
|
1.000
|
1.000
|
Hsc_gene_12239.t1
|
Hsc_gene_12239.t1;Hsc_gene_12242.t1
|
— |
Q19038.1 Degenerin del-1 [Caenorhabditis elegans]
|
KAI1716460.1 amiloride-sensitive sodium channel domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005216|GO:0005272|GO:0006811|GO:0006814|GO:0016020
|
GO:0008150_0.961|GO:0009987_0.805|GO:0005575_0.794|GO:0110165_0.794|GO:0003674_0.659|GO:0016020_0.645|GO:0050896_0.594|GO:0051179_0.585|GO:0006810_0.573|GO:0051234_0.573|GO:0055085_0.530|GO:0006811_0.508|GO:0071944_0.508|GO:0034220_0.507
|
IPR001873+84-686_89-674_110-127_149-165_386-397_401-417_430-448_454-472_484-500_518-529_529-546_579-599_620-640_640-654_654-670+|IPR004726+89-674+|IPR020903+518-538+
|
— |
PF00858+89-674+Amiloride-sensitive_sodium_channel
|
— |
PTHR11690+84-686+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;795-807
|
1.000
|
2-794
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.844
|
91145.780
|
8.322
|
25.500
|
25.651
|
12.268
|
48.203
|
51.797
|
15.118
|
10.533
|
50.929
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
547.450
|
75.916
|
320.600
|
109.141
|
39.971
|
34.640
|
59.699
|
71.117
|
2182.666
|
491.437
|
1216.249
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.849
|
0.386
|
-1.446
|
-1.484
|
— |
0.799
|
0.932
|
— |
2.042
|
-4.141
|
-3.401
|
— | — |
No JSON data available for plots.