Hg_chrom4_TN10mRNA_8703
Organism: Heterodera glycines Gene Locus: chr4:10897775-10899944 Feature type: polypeptideProtein Sequence
Length: 467
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.772 | 0.896 | 0.701 | 0.96 | 1.32 | 1.153 | 0.561 | 1.499 | 1.713 | 1.302 | 1.038 | 1.26 | 1.725 | 0.535 | 0.961 | 1.101 | 0.842 | 0.811 | 1.318 | 0.819 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8173
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.658
|
0.254
|
0.011
|
0.425
|
0.334
|
0.064
|
0.127
|
0.087
|
0.083
|
0.385
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003941
|
2.000
|
1.000
|
Hsc_gene_14878.t1
|
Hsc_gene_14605.t1;Hsc_gene_16017.t1;Hsc_gene_21964.t1
|
— | — |
KAK1901966.1 putative protein kinase UbiB [Dissostichus eleginoides]
|
No
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.949|GO:0009987_0.900|GO:0003674_0.855|GO:0065007_0.822|GO:0050789_0.802|GO:0005488_0.759|GO:0071840_0.748|GO:0016043_0.747|GO:0032502_0.746|GO:0048856_0.746|GO:0006996_0.708|GO:0009653_0.688|GO:0050793_0.686|GO:0007010_0.682|GO:0000902_0.677|GO:0022603_0.676|GO:0022604_0.674|GO:0097159_0.674|GO:0003676_0.662|GO:0003677_0.654
|
IPR012337+130-393+
|
— | — | — |
PTHR37162+1-418+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4
|
1.000
|
5-467
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.568
|
53527.680
|
7.261
|
6.000
|
26.338
|
13.704
|
47.537
|
52.463
|
14.561
|
11.777
|
42.827
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
5.157
|
0.307
|
0.284
|
15.322
|
4.696
|
0.746
|
0.000
|
1.666
|
2.410
|
12.121
|
7.959
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
5.509
|
5.829
|
-1.736
|
-2.636
|
— | — |
-4.750
|
— | — | — | — | — |
No JSON data available for plots.