Hg_chrom4_TN10mRNA_8707
Organism: Heterodera glycines Gene Locus: chr4:10918788-10927856 Feature type: polypeptideProtein Sequence
Length: 518
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.898 | 0.808 | 0.842 | 0.666 | 0.997 | 1.485 | 0.896 | 1.158 | 1.373 | 1.017 | 0.907 | 1.363 | 1.502 | 1.151 | 0.985 | 0.855 | 0.665 | 1.258 | 0.297 | 1.079 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8177
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — |
12-33
|
0.998
|
— | — |
0.000
|
— | — |
0.124
|
0.903
|
0.026
|
0.367
|
0.035
|
0.086
|
0.087
|
0.036
|
0.053
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009008
|
1.000
|
1.000
|
Hsc_gene_12233.t1
|
Hsc_gene_12232.t1;Hsc_gene_12232.t2;Hsc_gene_12233.t1;Hsc_gene_12233.t2
|
— |
Q6GM82.1 Alanine aminotransferase 2 [Xenopus laevis]
|
KAF7634712.1 Aminotran_1_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008483|GO:0009058|GO:0030170
|
GO:0005575_0.795|GO:0110165_0.789|GO:0008150_0.657|GO:0005622_0.634|GO:0005737_0.607|GO:0016020_0.604|GO:0003674_0.567|GO:0043226_0.566|GO:0043227_0.535|GO:0009987_0.517|GO:0043229_0.510
|
IPR004839+139-492+|IPR015421+144-393+|IPR015422+45-517+|IPR015424+47-512+|IPR045088+33-518+
|
— |
PF00155+139-492+Aminotransferase_class_I_and_II
|
G3DSA:3.40.640.10:FF:000012+144-393+alanine_aminotransferase_2|G3DSA:3.90.1150.10:FF:000010+364-517+Alanine_aminotransferase_2
|
PTHR11751+33-518+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-518
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.731
|
57602.150
|
7.629
|
7.000
|
23.745
|
11.776
|
43.050
|
56.950
|
13.127
|
10.618
|
49.614
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
2862.830
|
1046.370
|
2784.146
|
2220.302
|
2407.079
|
2728.315
|
3807.891
|
5418.861
|
765.883
|
4295.608
|
2782.869
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.184
|
0.948
|
-0.219
|
— |
0.196
|
0.491
|
0.890
|
-0.368
|
-2.571
|
— | — | — | — |
No JSON data available for plots.