Hg_chrom4_TN10mRNA_8708
Organism: Heterodera glycines Gene Locus: chr4:10928630-10930752 Feature type: polypeptideProtein Sequence
Length: 234
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.547 | 1.193 | 0.777 | 1.032 | 1.068 | 0.986 | 0.865 | 0.855 | 1.425 | 1.559 | 1.101 | 1.257 | 1.781 | 0.74 | 1.308 | 1.221 | 0.49 | 0.648 | 1.644 | 0.503 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8178
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.826
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.621
|
0.525
|
0.189
|
0.566
|
0.094
|
0.066
|
0.111
|
0.009
|
0.167
|
0.162
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000575
|
5.000
|
2.000
|
Hsc_gene_13435.t1;Hsc_gene_13455.t1
|
Hsc_gene_13435.t1
|
— |
O14802.2 DNA-directed RNA polymerase III subunit RPC1 [Homo sapiens]
|
KAF7634612.1 DNA-directed RNA polymerase subunit [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0003899|GO:0006351
|
GO:0005575_0.935|GO:0110165_0.864|GO:0005622_0.789|GO:0016020_0.777|GO:0043226_0.770|GO:0043229_0.754|GO:0043227_0.678|GO:0043231_0.672|GO:0008150_0.665|GO:0009987_0.619
|
IPR007066+5-81+|IPR007083+112-202+|IPR038120+79-210+|IPR042102+1-78+|IPR045867+12-202+
|
— |
PF04983+5-81+RNA_polymerase_Rpb1,_domain_3|PF05000+112-202+RNA_polymerase_Rpb1,_domain_4
|
— |
PTHR19376+12-202+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-234
|
9lxo_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.901
|
26686.870
|
9.038
|
9.000
|
26.068
|
11.966
|
46.581
|
53.419
|
15.385
|
10.684
|
44.017
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
3279.614
|
2454.604
|
2269.017
|
1751.757
|
1459.395
|
2324.597
|
2632.409
|
1645.855
|
2975.921
|
6664.756
|
5083.827
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.343
|
-0.624
|
-0.265
|
-0.295
|
0.685
|
0.190
|
-0.604
|
0.820
|
— | — | — | — | — |
No JSON data available for plots.