Hg_chrom4_TN10mRNA_8709
Organism: Heterodera glycines Gene Locus: chr4:10928630-10949791 Feature type: polypeptideProtein Sequence
Length: 867
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.899 | 0.992 | 1.09 | 1.074 | 0.865 | 1.301 | 0.796 | 1.211 | 1.615 | 1.185 | 0.891 | 1.696 | 1.025 | 0.71 | 1.318 | 0.923 | 1.097 | 0.839 | 0.444 | 0.475 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8178
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.826
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.354
|
0.395
|
0.056
|
0.296
|
0.108
|
0.124
|
0.078
|
0.043
|
0.246
|
0.298
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000575
|
5.000
|
2.000
|
Hsc_gene_13435.t1;Hsc_gene_13455.t1
|
Hsc_gene_13455.t1
|
— |
O14802.2 DNA-directed RNA polymerase III subunit RPC1 [Homo sapiens]
|
KAF7634612.1 DNA-directed RNA polymerase subunit [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0003899|GO:0006351
|
GO:0005575_0.899|GO:0110165_0.808|GO:0005622_0.729|GO:0016020_0.674|GO:0043226_0.666|GO:0008150_0.665|GO:0043229_0.642|GO:0009987_0.608|GO:0043227_0.571|GO:0043231_0.552|GO:0003674_0.509|GO:0008152_0.509
|
IPR007066+5-81+|IPR007081+189-624+|IPR007083+112-200+|IPR038120+74-193+|IPR042102+8-73+|IPR045867+190-629+
|
— |
PF04983+5-81+RNA_polymerase_Rpb1,_domain_3|PF04998+189-624+RNA_polymerase_Rpb1,_domain_5|PF05000+112-200+RNA_polymerase_Rpb1,_domain_4
|
— |
PTHR19376+190-629+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;228-354
|
2.000
|
2-227;355-867
|
9lxo_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.730
|
96232.520
|
8.217
|
20.500
|
25.952
|
8.304
|
48.443
|
51.557
|
14.764
|
11.188
|
50.173
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
3279.614
|
2454.604
|
2269.017
|
1751.757
|
1459.395
|
2324.597
|
2632.409
|
1645.855
|
2975.921
|
6664.756
|
5083.827
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.343
|
-0.624
|
-0.265
|
-0.295
|
0.685
|
0.190
|
-0.604
|
0.820
|
— | — | — | — | — |
No JSON data available for plots.