Hg_chrom4_TN10mRNA_8710
Organism: Heterodera glycines Gene Locus: chr4:10950095-10954032 Feature type: polypeptideProtein Sequence
Length: 144
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.807 | 1.13 | 0.631 | 0.958 | 0.347 | 0.89 | 0.248 | 1.042 | 2.16 | 1.595 | 0.316 | 3.676 | 3.086 | 0.801 | 0.709 | 0.397 | 0.911 | 0.947 | 1.068 | 2.247 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8179
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.888
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.171
|
0.105
|
0.003
|
0.143
|
0.652
|
0.333
|
0.523
|
0.001
|
0.509
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003945
|
1.000
|
2.000
|
Hsc_gene_12227.t1;Hsc_gene_22461.t1
|
Hsc_gene_12227.t1;Hsc_gene_22461.t1
|
— |
Q22361.2 Protein cornichon homolog 1 [Caenorhabditis elegans]
|
KAI3408883.1 Protein cornichon 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016192
|
GO:0008150_0.943|GO:0005575_0.853|GO:0110165_0.853|GO:0009987_0.835|GO:0016020_0.787|GO:0071944_0.782|GO:0005886_0.780|GO:0051179_0.719|GO:0006810_0.660|GO:0051234_0.660|GO:0005622_0.622|GO:0005737_0.622|GO:0043226_0.619|GO:0065007_0.595|GO:0005773_0.580|GO:0043227_0.580|GO:0043229_0.580|GO:0043231_0.580|GO:0003674_0.548|GO:0012505_0.542|GO:0050896_0.534|GO:0050789_0.522|GO:0051716_0.511|GO:0050794_0.501
|
IPR003377+7-135_8-135+|IPR033466+29-43+
|
SM01398+7-135+
|
PF03311+8-135+Cornichon_protein
|
— |
PTHR12290+10-135+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-144
|
6ud8_H
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.611
|
17134.480
|
7.182
|
1.500
|
13.194
|
22.222
|
29.861
|
70.139
|
7.639
|
5.556
|
38.889
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
588.351
|
535.417
|
453.389
|
527.516
|
698.473
|
831.012
|
747.219
|
774.572
|
175.937
|
729.231
|
492.105
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.468
|
-0.159
|
0.327
|
0.373
|
0.265
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.