Hg_chrom4_TN10mRNA_8717
Organism: Heterodera glycines Gene Locus: chr4:11028024-11032292 Feature type: polypeptideProtein Sequence
Length: 284
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.737 | 1.556 | 0.768 | 0.729 | 0.939 | 0.993 | 0.671 | 0.528 | 1.095 | 1.237 | 0.534 | 1.864 | 2.152 | 1.287 | 1.293 | 0.805 | 1.154 | 0.907 | 0.542 | 1.036 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8185
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RRRSPPSLHFMTDRQRRA
|
39-60
|
0.998
|
4-54
|
0.999
|
— | — |
0.001
|
— | — |
0.043
|
0.951
|
0.012
|
0.104
|
0.231
|
0.056
|
0.152
|
0.022
|
0.083
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009009
|
1.000
|
1.000
|
Hsc_gene_22445.t1
|
Hsc_gene_22445.t1
|
— |
A3KMZ6.1 Cytochrome c oxidase assembly protein COX11, mitochondrial [Bos taurus]
|
KAH7724664.1 Protein JC8.5 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005507
|
GO:0005575_0.884|GO:0110165_0.881|GO:0016020_0.814|GO:0005622_0.782|GO:0005737_0.771|GO:0043226_0.743|GO:0043229_0.728|GO:0043227_0.724|GO:0043231_0.710|GO:0008150_0.673|GO:0009987_0.612|GO:0003674_0.601|GO:0005739_0.564|GO:0008152_0.514
|
IPR007533+59-246_87-236+|IPR023471+112-243_113-239+
|
— |
PF04442+87-236+Cytochrome_c_oxidase_assembly_protein_CtaG/Cox11
|
G3DSA:2.60.370.10:FF:000001+113-245+COX11_cytochrome_c_oxidase_assembly_homolog
|
PTHR21320+75-239+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-284
|
1sp0_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.769
|
32252.960
|
7.146
|
1.500
|
20.775
|
13.028
|
44.014
|
55.986
|
10.915
|
9.859
|
50.352
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
514.913
|
307.544
|
367.078
|
370.232
|
456.569
|
369.155
|
528.228
|
291.861
|
93.937
|
1173.290
|
710.710
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.271
|
-0.292
|
0.527
|
-0.442
|
0.998
|
-3.771
|
— | — | — | — |
No JSON data available for plots.